RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 AKR1E2Q96JD6 320 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 MS4A7Q9GZW8 240 aaPredicted RBP9.21□□□□□ -0.93
CLIP1-213ENST00000540338 IL36RNQ9UBH0 155 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 PURGQ9UJV8 347 aaKnown RBP9.21□□□□□ -0.93
CLIP1-213ENST00000540338 NCOA6Q14686 2063 aaPredicted RBP9.21□□□□□ -0.93
CLIP1-213ENST00000540338 A8MXK9 166 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 AQP7O14520 342 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 F2RP25116 425 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 Q6ZSR3 168 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 OR5C1Q8NGR4 320 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 KLF14Q8TD94 323 aaPredicted RBP9.21□□□□□ -0.93
CLIP1-213ENST00000540338 LRRC29Q8WV35 223 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 MARS2Q96GW9 593 aaKnown RBP9.21□□□□□ -0.93
CLIP1-213ENST00000540338 RAB40CQ96S21 281 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 MSL2Q9HCI7 577 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 C19orf12Q9NSK7 152 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 PSENENQ9NZ42 101 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 ZNF581Q9P0T4 197 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 FAM96BQ9Y3D0 163 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 TRBV6-7A0A0A0MS04 114 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 UMAD1C9J7I0 102 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 SMPD2O60906 423 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 SS18L1O75177 396 aaPredicted RBP9.21□□□□□ -0.94
CLIP1-213ENST00000540338 IL18BPO95998 194 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 IFNA17P01571 189 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 IAPPP10997 89 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 TUBG1P23258 451 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 MIDNQ504T8 468 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 FAM209AQ5JX71 171 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 SPANXN5Q5MJ07 72 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 H2BFWTQ7Z2G1 175 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 TP53RKQ96S44 253 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 TUBG2Q9NRH3 451 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 CHST1O43916 411 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 RHBDL1O75783 438 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 WNT5AP41221 380 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 CASP6P55212 293 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 EWSR1Q01844 656 aaKnown RBP eCLIP9.21□□□□□ -0.94
CLIP1-213ENST00000540338 SOHLH1Q5JUK2 328 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 KRBOX4Q5JUW0 171 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 DMBX1Q8NFW5 382 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 OR8G5Q8NG78 346 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 SFT2D1Q8WV19 159 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 UQCC1Q9NVA1 299 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 CACNG5Q9UF02 275 aa9.21□□□□□ -0.94
CLIP1-213ENST00000540338 SEC11BP0C7V7 166 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 RBPJQ06330 500 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 ZNF818PQ6ZRF7 136 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 ZNF610Q8N9Z0 462 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 OR52M1Q8NGK5 317 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 RFESDQ8TAC1 157 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 EDARADDQ8WWZ3 215 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 OPN3Q9H1Y3 402 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-213ENST00000540338 ZDHHC11Q9H8X9 412 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 TUBD1Q9UJT1 453 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 FBXO7Q9Y3I1 522 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 KCNMB2Q9Y691 235 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 SMCO3A2RU48 225 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 H0Y980 276 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 S100A9P06702 114 aaKnown RBP9.2□□□□□ -0.94
CLIP1-213ENST00000540338 SULT1A2P50226 295 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 DVL1P1P54792 670 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-213ENST00000540338 NHLH2Q02577 135 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 MRGPRDQ8TDS7 321 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 PRELID3BQ9Y3B1 194 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 SPRY3O43610 288 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 PGLYRP1O75594 196 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-213ENST00000540338 CELA3BP08861 270 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 LPAR6P43657 344 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 RHEBQ15382 184 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 THNSL2Q86YJ6 484 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 C1orf174Q8IYL3 243 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 GPHA2Q96T91 129 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 PARP11Q9NR21 331 aa9.2□□□□□ -0.94
CLIP1-213ENST00000540338 OOEPA6NGQ2 149 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 F8VVB4 439 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 F8VWA3 439 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 GPR12P47775 334 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 RPP30P78346 268 aaKnown RBP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 RNFT1Q5M7Z0 435 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 PRAMEF6Q5VXH4 476 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 OR8G2PQ6IF36 304 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 VWA1Q6PCB0 445 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 SELENOHQ8IZQ5 122 aaKnown RBP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 EIF4E3Q8N5X7 224 aaKnown RBP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 UBAC2Q8NBM4 344 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 OR51I2Q9H344 312 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 PRELID1Q9Y255 219 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 DOCK7Q96N67 2140 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 A0A1W2PNU3 283 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 KRASP01116 189 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 HEXAP06865 529 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 SFTA3P0C7M3 94 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 PSG2P11465 335 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 KLF3P57682 345 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 RAB5BP61020 215 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 ERVS71-1P61550 626 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 ZNF154Q13106 437 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 TMEM88Q6PEY1 159 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 RBMXL1Q96E39 390 aaKnown RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms