RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 OR2G2Q8NGZ5 317 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 CLHC1Q8NHS4 586 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 FAM81AQ8TBF8 368 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 FANK1Q8TC84 345 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 STMN2Q93045 179 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 TMBIM1Q969X1 311 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 SNF8Q96H20 258 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 RNF145Q96MT1 663 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 TSNARE1Q96NA8 513 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 OLFM3Q96PB7 478 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 ALS2CR12Q96Q35 445 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 ATP5SQ99766 215 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 KCTD14Q9BQ13 255 aaPredicted RBP2.51□□□□□ -2.01
CD44-235ENST00000532339 AIF1LQ9BQI0 150 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 C20orf24Q9BUV8 137 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 ROGDIQ9GZN7 287 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 OR51M1Q9H341 326 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 RPF2Q9H7B2 306 aaKnown RBP2.51□□□□□ -2.01
CD44-235ENST00000532339 PLGRKTQ9HBL7 147 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 CRLF2Q9HC73 371 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 MRPL47Q9HD33 250 aaKnown RBP2.51□□□□□ -2.01
CD44-235ENST00000532339 FGF20Q9NP95 211 aaPredicted RBP2.51□□□□□ -2.01
CD44-235ENST00000532339 CCL28Q9NRJ3 127 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 MS4A12Q9NXJ0 267 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 XCL2Q9UBD3 114 aa2.51□□□□□ -2.01
CD44-235ENST00000532339 TNXBP22105 4242 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 IGKV1D-13A0A0B4J2D9 117 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 A0A0U1RQV1 116 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 C12orf71A8MTZ7 269 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 GPR171O14626 319 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 LSM1O15116 133 aaKnown RBP2.5□□□□□ -2.01
CD44-235ENST00000532339 RAD51CO43502 376 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 FADS1O60427 444 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 BRI3O95415 125 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 FGGP02679 453 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 IGKV1-13P0DP09 117 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 CBR1P16152 277 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 FUT3P21217 361 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 SLC2A5P22732 501 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 ELK4P28324 431 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 CD1BP29016 333 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 IL12BP29460 328 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 ARR3P36575 388 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 PPICP45877 212 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 TCTAP57738 103 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 SLC25A11Q02978 314 aaKnown RBP2.5□□□□□ -2.01
CD44-235ENST00000532339 MERTKQ12866 999 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 ACSBG2Q5FVE4 666 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 SOHLH1Q5JUK2 328 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 STEAP4Q687X5 459 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 AGTRAPQ6RW13 159 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 CENPQQ7L2Z9 268 aaPredicted RBP2.5□□□□□ -2.01
CD44-235ENST00000532339 PID1Q7Z2X4 250 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 LRRC6Q86X45 466 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 LYPD6Q86Y78 171 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 C20orf203Q8NBC4 194 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 ZFP90Q8TF47 636 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 VAT1Q99536 393 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 SLC29A1Q99808 456 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 RARRES2Q99969 163 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 BPIFA3Q9BQP9 254 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 CDCA4Q9BXL8 241 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 OR11A1Q9GZK7 315 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 AUNIPQ9H7T9 357 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 SIAEQ9HAT2 523 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 RETNQ9HD89 108 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 TAAR3PQ9P1P4 343 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 HEY1Q9Y5J3 304 aa2.5□□□□□ -2.01
CD44-235ENST00000532339 IGLV3-9A0A075B6K5 115 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 ZNF726A6NNF4 738 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 GOLGA8KD6RF30 607 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 GOLGA8TH3BQL2 631 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 PPP1R2P9O14990 202 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 SCELO95171 688 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 YEATS4O95619 227 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 MOSP00540 346 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 RPS3P23396 243 aaKnown RBP eCLIP2.49□□□□□ -2.01
CD44-235ENST00000532339 NAA10P41227 235 aaPredicted RBP2.49□□□□□ -2.01
CD44-235ENST00000532339 EIF1P41567 113 aaKnown RBP2.49□□□□□ -2.01
CD44-235ENST00000532339 TTPAP49638 278 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 RAB9AP51151 201 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 SUB1P53999 127 aaKnown RBP eCLIP2.49□□□□□ -2.01
CD44-235ENST00000532339 RAB25P57735 213 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 RGS8P57771 180 aaPredicted RBP2.49□□□□□ -2.01
CD44-235ENST00000532339 ZNF92Q03936 586 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 DAZ2Q13117 558 aaKnown RBP2.49□□□□□ -2.01
CD44-235ENST00000532339 SELENBP1Q13228 472 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 PNOCQ13519 176 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 PDK2Q15119 407 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 MOGQ16653 247 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 TMEM176BQ3YBM2 270 aaPredicted RBP2.49□□□□□ -2.01
CD44-235ENST00000532339 TSPO2Q5TGU0 170 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 OTPQ5XKR4 325 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 DUPD1Q68J44 220 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 CNIH2Q6PI25 160 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 EIF3MQ7L2H7 374 aaKnown RBP2.49□□□□□ -2.01
CD44-235ENST00000532339 SLC16A14Q7RTX9 510 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 ABHD12BQ7Z5M8 362 aaPredicted RBP2.49□□□□□ -2.01
CD44-235ENST00000532339 SGPP2Q8IWX5 399 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 PDIK1LQ8N165 341 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms