RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 WDFY4Q6ZS81 3184 aa16.47■□□□□ 0.23
VPS28-213ENST00000530983 KIR2DS1A0A191URI9 304 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 NXPH3O95157 252 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 CELA3AP09093 270 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 KIR2DS4P43632 304 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 KIR2DS1Q14954 304 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 PYY3Q5JQD4 70 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 SP5Q6BEB4 398 aaPredicted RBP16.46■□□□□ 0.23
VPS28-213ENST00000530983 TUSC5Q8IXB3 177 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 NEK7Q8TDX7 302 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 YPEL4Q96NS1 127 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 PFDN5Q99471 154 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 ZNF552Q9H707 407 aaPredicted RBP16.46■□□□□ 0.23
VPS28-213ENST00000530983 PUS1Q9Y606 427 aaKnown RBP eCLIP16.46■□□□□ 0.23
VPS28-213ENST00000530983 SLC33A1O00400 549 aaPredicted RBP16.46■□□□□ 0.23
VPS28-213ENST00000530983 SYNGR1O43759 233 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 SS18L1O75177 396 aaPredicted RBP16.46■□□□□ 0.23
VPS28-213ENST00000530983 NGFP01138 241 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 IFNA17P01571 189 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 LHX2P50458 406 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 SSPNQ14714 243 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 CDPF1Q6NVV7 123 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 TMEM217Q8N7C4 229 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 CDX2Q99626 313 aaPredicted RBP16.46■□□□□ 0.23
VPS28-213ENST00000530983 LRFN1Q9P244 771 aa16.46■□□□□ 0.23
VPS28-213ENST00000530983 TRAPPC2LH3BP13 241 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 HSPA12AO43301 675 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 TNFSF12O43508 249 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 HOXA5P20719 270 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 RPS23P62266 143 aaKnown RBP16.45■□□□□ 0.22
VPS28-213ENST00000530983 RUNX1Q01196 453 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 PCSK4Q6UW60 755 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 C20orf204Q6ZNR8 217 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 OR5D13Q8NGL4 314 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 APOBEC3DQ96AK3 386 aaPredicted RBP16.45■□□□□ 0.22
VPS28-213ENST00000530983 CALHM2Q9HA72 323 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 TREM2Q9NZC2 230 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 TAAR3PQ9P1P4 343 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 BOKQ9UMX3 212 aaPredicted RBP16.45■□□□□ 0.22
VPS28-213ENST00000530983 RNF115Q9Y4L5 304 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 CHST1O43916 411 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 ITGA3P26006 1051 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 GPX4P36969 197 aaPredicted RBP16.45■□□□□ 0.22
VPS28-213ENST00000530983 RAB1AP62820 205 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 BAXQ07812 192 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 HIKESHIQ53FT3 197 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 HEPN1Q6WQI6 88 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 MKXQ8IYA7 352 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 IL22RA1Q8N6P7 574 aa16.45■□□□□ 0.22
VPS28-213ENST00000530983 SNIP1Q8TAD8 396 aaKnown RBP16.45■□□□□ 0.22
VPS28-213ENST00000530983 ZNF703Q9H7S9 590 aaPredicted RBP16.45■□□□□ 0.22
VPS28-213ENST00000530983 KMT2EQ8IZD2 1858 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 H0Y980 276 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 PGLYRP1O75594 196 aaPredicted RBP16.44■□□□□ 0.22
VPS28-213ENST00000530983 SLC34A2O95436 690 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 PDGFBP01127 241 aaPredicted RBP16.44■□□□□ 0.22
VPS28-213ENST00000530983 MMP9P14780 707 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 PAX9P55771 341 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 CLDN18P56856 261 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 ZNF154Q13106 437 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 C6orf15Q6UXA7 325 aaPredicted RBP16.44■□□□□ 0.22
VPS28-213ENST00000530983 CMTM1Q8IZ96 169 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 MRPL30Q8TCC3 161 aaKnown RBP16.44■□□□□ 0.22
VPS28-213ENST00000530983 KIAA1456Q9P272 454 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 LAMTOR5O43504 91 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 CTXN2P0C2S0 81 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 COX5BP10606 129 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 KIAA0141Q14154 515 aaPredicted RBP16.44■□□□□ 0.22
VPS28-213ENST00000530983 ZNF488Q96MN9 340 aa16.44■□□□□ 0.22
VPS28-213ENST00000530983 A0A0G2JRQ6 117 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 BTBD17A6NE02 478 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 NEURL1O76050 574 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 OR2C1O95371 312 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 SPINK2P20155 84 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 OR2M7Q8NG81 312 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 OR5A2Q8NGI9 324 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 IL22RA2Q969J5 263 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 GNPNAT1Q96EK6 184 aaPredicted RBP16.43■□□□□ 0.22
VPS28-213ENST00000530983 THOC3Q96J01 351 aaKnown RBP16.43■□□□□ 0.22
VPS28-213ENST00000530983 LIPGQ9Y5X9 500 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 ESPL1Q14674 2120 aa16.43■□□□□ 0.22
VPS28-213ENST00000530983 C19orf67A6NJJ6 358 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 LY86O95711 162 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 F2RP25116 425 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 HAGHQ16775 308 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 HES7Q9BYE0 225 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 LOXL2Q9Y4K0 774 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 C3orf80F5H4A9 247 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 SRP19P09132 144 aaKnown RBP16.42■□□□□ 0.22
VPS28-213ENST00000530983 CEACAM1P13688 526 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 CDX1P47902 265 aaPredicted RBP16.42■□□□□ 0.22
VPS28-213ENST00000530983 GTF3AQ92664 365 aaKnown RBP16.42■□□□□ 0.22
VPS28-213ENST00000530983 POM121L2Q96KW2 1035 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 FAM173AQ9BQD7 235 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 COL6A3P12111 3177 aa16.42■□□□□ 0.22
VPS28-213ENST00000530983 CD300LBA8K4G0 201 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 H3BQ15 152 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 LILRA1O75019 489 aa16.41■□□□□ 0.22
VPS28-213ENST00000530983 RPS10P46783 165 aaKnown RBP16.41■□□□□ 0.22
VPS28-213ENST00000530983 ZNF295-AS1Q8N0V1 137 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms