RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MGST3O14880 152 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 OR4E1P0C645 316 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 DNASE1P24855 282 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 CD80P33681 288 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 C4orf46Q504U0 113 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 ZNF626Q68DY1 528 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 TRAT1Q6PIZ9 186 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 CCL19Q99731 98 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 TRAF4Q9BUZ4 470 aaPredicted RBP17.71■□□□□ 0.43
VPS28-212ENST00000530836 SHARPINQ9H0F6 387 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 FAM234AQ9H0X4 552 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 NCOR1P1Q9H4R4 102 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 TMEM106BQ9NUM4 274 aa17.71■□□□□ 0.43
VPS28-212ENST00000530836 LGALS8O00214 317 aa17.7■□□□□ 0.42
VPS28-212ENST00000530836 SSNA1O43805 119 aa17.7■□□□□ 0.42
VPS28-212ENST00000530836 HNRNPCP07910 306 aaKnown RBP eCLIP17.7■□□□□ 0.42
VPS28-212ENST00000530836 NPY4RP50391 375 aa17.7■□□□□ 0.42
VPS28-212ENST00000530836 SEC61A1P61619 476 aaKnown RBP17.7■□□□□ 0.42
VPS28-212ENST00000530836 HOXA4Q00056 320 aaPredicted RBP17.7■□□□□ 0.42
VPS28-212ENST00000530836 TMEM185AQ8NFB2 350 aa17.7■□□□□ 0.42
VPS28-212ENST00000530836 ZFAND1Q8TCF1 268 aa17.7■□□□□ 0.42
VPS28-212ENST00000530836 CABLES2Q9BTV7 478 aa17.7■□□□□ 0.42
VPS28-212ENST00000530836 RAB1BQ9H0U4 201 aa17.7■□□□□ 0.42
VPS28-212ENST00000530836 RAI1Q7Z5J4 1906 aaPredicted RBP17.7■□□□□ 0.42
VPS28-212ENST00000530836 IGHV3OR15-7A0A075B7D8 119 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 IGHV1-69-2A0A0G2JMI3 117 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 OR5H14A6NHG9 310 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 K7N7A8 449 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 SCTP09683 121 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 VSIG10L2P0DP72 767 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 RCC1P18754 421 aaPredicted RBP17.69■□□□□ 0.42
VPS28-212ENST00000530836 FCGR2CP31995 323 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 UCP3P55916 312 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 KRBOX4Q5JUW0 171 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 C6orf183Q5T699 404 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 CCL17Q92583 94 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 VRK1Q99986 396 aaPredicted RBP17.69■□□□□ 0.42
VPS28-212ENST00000530836 ZNF665Q9H7R5 613 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 ING3Q9NXR8 418 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 C14orf166Q9Y224 244 aaKnown RBP17.69■□□□□ 0.42
VPS28-212ENST00000530836 PPIAL4EA0A075B759 164 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 NPIPB11E5RHQ5 1161 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 PPIAL4DF5H284 164 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 HPXP02790 462 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 PPIAL4FP0DN26 164 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 AESQ08117 197 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 KCNJ8Q15842 424 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 HFEQ30201 348 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 IGSF11Q5DX21 431 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 C11orf71Q6IPW1 123 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 LPCAT3Q6P1A2 487 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 ZNF431Q8TF32 576 aaPredicted RBP17.69■□□□□ 0.42
VPS28-212ENST00000530836 MBD6Q96DN6 1003 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 SEC22CQ9BRL7 303 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 ZNF69Q9UC07 566 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 OPN4Q9UHM6 478 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 METRNQ9UJH8 293 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 PPIAL4AQ9Y536 164 aa17.69■□□□□ 0.42
VPS28-212ENST00000530836 CSMD1Q96PZ7 3565 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 DYSFO75923 2080 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 MEIKINA0A087WXM9 373 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 NKX6-3A6NJ46 265 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 OVOL3O00110 214 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 FSTL3O95633 263 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 PGAM2P15259 253 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 HERV-K104P61576 105 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 HMGN3Q15651 99 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 TMEM128Q5BJH2 165 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 MOB3AQ96BX8 217 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 COQ2Q96H96 371 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 SLC23A1Q9UHI7 598 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 KIF25Q9UIL4 384 aa17.68■□□□□ 0.42
VPS28-212ENST00000530836 CTSDP07339 412 aaPredicted RBP17.67■□□□□ 0.42
VPS28-212ENST00000530836 ERP29P30040 261 aaKnown RBP17.67■□□□□ 0.42
VPS28-212ENST00000530836 FAM201AQ5SY85 155 aa17.67■□□□□ 0.42
VPS28-212ENST00000530836 ZNF788Q6ZQV5 615 aa17.67■□□□□ 0.42
VPS28-212ENST00000530836 OR10J5Q8NHC4 309 aa17.67■□□□□ 0.42
VPS28-212ENST00000530836 C5orf66Q9H5L9 145 aa17.67■□□□□ 0.42
VPS28-212ENST00000530836 DLL4Q9NR61 685 aa17.67■□□□□ 0.42
VPS28-212ENST00000530836 ZNF221Q9UK13 617 aa17.67■□□□□ 0.42
VPS28-212ENST00000530836 TRBV6-7A0A0A0MS04 114 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 BET1O15155 118 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 NDUFA2O43678 99 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 PPYP01298 95 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 ZNF728P0DKX0 622 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 MRPS11P82912 194 aaKnown RBP17.66■□□□□ 0.42
VPS28-212ENST00000530836 DHODHQ02127 395 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 HERPUD1Q15011 391 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 C11orf88Q6PI97 169 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 SLC38A6Q8IZM9 456 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 CAPSLQ8WWF8 208 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 NEU4Q8WWR8 484 aaPredicted RBP17.66■□□□□ 0.42
VPS28-212ENST00000530836 TAF9BQ9HBM6 251 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 BEX4Q9NWD9 120 aaPredicted RBP17.66■□□□□ 0.42
VPS28-212ENST00000530836 MAB21L2Q9Y586 359 aa17.66■□□□□ 0.42
VPS28-212ENST00000530836 ANKRD17O75179 2603 aaKnown RBP17.66■□□□□ 0.42
VPS28-212ENST00000530836 SIGLEC5O15389 551 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 HLA-AP01891 365 aaKnown RBP17.65■□□□□ 0.42
VPS28-212ENST00000530836 SULT1A3P0DMM9 295 aa17.65■□□□□ 0.42
VPS28-212ENST00000530836 SULT1A4P0DMN0 295 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms