RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 C12orf77C9JDV5 145 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 H0YHG0 523 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 VSIG8P0DPA2 414 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 GTF2F2P13984 249 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 MGMTP16455 207 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 RCC1P18754 421 aaPredicted RBP8.5□□□□□ -1.05
CD44-227ENST00000528086 NFYBP25208 207 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 KCNJ3P48549 501 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 ZNF134P52741 427 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 MED21Q13503 144 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 SSX1Q16384 188 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 LTC4SQ16873 150 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 TCTEX1D4Q5JR98 221 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 OR52W1Q6IF63 320 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 LINC00596Q86U02 117 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 ZNF439Q8NDP4 499 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 OR4C13Q8NGP0 309 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 OR9G1Q8NH87 305 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 MYDGFQ969H8 173 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 TMEM203Q969S6 136 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 ST6GALNAC6Q969X2 333 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 CPNE2Q96FN4 548 aaPredicted RBP8.5□□□□□ -1.05
CD44-227ENST00000528086 BARHL1Q9BZE3 327 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 NPFFR1Q9GZQ6 430 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 MMP28Q9H239 520 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 VCXQ9H320 206 aa8.5□□□□□ -1.05
CD44-227ENST00000528086 IGHV3-43A0A0B4J1X8 118 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 TMEM30CPA0ZSE6 113 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 FOXI3A8MTJ6 420 aaPredicted RBP8.49□□□□□ -1.05
CD44-227ENST00000528086 LEUTXA8MZ59 168 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 F2RL2O00254 374 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 ATP6V1G2O95670 118 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 CSTBP04080 98 aaKnown RBP8.49□□□□□ -1.05
CD44-227ENST00000528086 IGHV3-43DP0DP04 118 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 CD28P10747 220 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 SRMP19623 302 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 HTR2CP28335 458 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 PLA2G7Q13093 441 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 GPR50Q13585 617 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 HERPUD1Q15011 391 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 MED22Q15528 200 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 ATAD3CQ5T2N8 411 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 AWAT2Q6E213 333 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 RAB12Q6IQ22 244 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 C10orf99Q6UWK7 81 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 PRSS48Q7RTY5 328 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 CEACAM19Q7Z692 300 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 LYG1Q8N1E2 194 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 ZNF565Q8N9K5 539 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 OR1L1Q8NH94 360 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 FAM46BQ96A09 425 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 UQCC2Q9BRT2 126 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 NICN1Q9BSH3 213 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 SELENOIQ9C0D9 397 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 CKLFQ9UBR5 152 aa8.49□□□□□ -1.05
CD44-227ENST00000528086 TGP01266 2768 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 TMEM14DPA8MWL7 114 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 TIMM23O14925 209 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 SLC22A1O15245 554 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 RGS10O43665 173 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 ZNF780AO75290 641 aaPredicted RBP8.48□□□□□ -1.05
CD44-227ENST00000528086 VSIG10L2P0DP72 767 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 CPEP16870 476 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 CHATP28329 748 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 GNG10P50151 68 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 FABP5Q01469 135 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 RBM39Q14498 530 aaKnown RBP8.48□□□□□ -1.05
CD44-227ENST00000528086 GNMTQ14749 295 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 SYT6Q5T7P8 510 aaPredicted RBP8.48□□□□□ -1.05
CD44-227ENST00000528086 MS4A15Q8N5U1 240 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 LINC00311Q8N616 119 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 DRAM1Q8N682 238 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 OR10A7Q8NGE5 316 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 OR4K15Q8NH41 348 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 OR56B4Q8NH76 319 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 MRPL30Q8TCC3 161 aaKnown RBP8.48□□□□□ -1.05
CD44-227ENST00000528086 PHYHIPQ92561 330 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 MRPS24Q96EL2 167 aaKnown RBP8.48□□□□□ -1.05
CD44-227ENST00000528086 CNBD2Q96M20 576 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 RBM14Q96PK6 669 aaKnown RBP8.48□□□□□ -1.05
CD44-227ENST00000528086 SULT4A1Q9BR01 284 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 RAB18Q9NP72 206 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 ISYNA1Q9NPH2 558 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 MBNL3Q9NUK0 354 aaKnown RBP8.48□□□□□ -1.05
CD44-227ENST00000528086 GFOD1Q9NXC2 390 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 SCN3BQ9NY72 215 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 TPRKBQ9Y3C4 175 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 PEX16Q9Y5Y5 336 aa8.48□□□□□ -1.05
CD44-227ENST00000528086 UBE2QL1A1L167 161 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 FAM90A10PA6NDY2 464 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 FAM90A7PA6NKC0 464 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 FAM90A23PA8MXZ1 464 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 ZNF736B4DX44 427 aaPredicted RBP8.47□□□□□ -1.05
CD44-227ENST00000528086 TOR1AO14656 332 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 ORC5O43913 435 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 CRTAPO75718 401 aaPredicted RBP8.47□□□□□ -1.05
CD44-227ENST00000528086 GZMHP20718 246 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 FUT3P21217 361 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 RPS27AP62979 156 aaKnown RBP8.47□□□□□ -1.05
CD44-227ENST00000528086 MLLT11Q13015 90 aaPredicted RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms