RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 HIF1ANQ9NWT6 349 aa13.38□□□□□ -0.27
LSM1-204ENST00000522515 ONECUT1Q9UBC0 465 aa13.38□□□□□ -0.27
LSM1-204ENST00000522515 RABL2AQ9UBK7 228 aaPredicted RBP13.38□□□□□ -0.27
LSM1-204ENST00000522515 RABL2BQ9UNT1 228 aa13.38□□□□□ -0.27
LSM1-204ENST00000522515 INSIG2Q9Y5U4 225 aa13.38□□□□□ -0.27
LSM1-204ENST00000522515 TRAV20A0A0B4J274 112 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 POM121CA8CG34 1229 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 C12orf77C9JDV5 145 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 FCER2P06734 321 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 ZNF728P0DKX0 622 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 ZNF16P17020 682 aaPredicted RBP13.37□□□□□ -0.27
LSM1-204ENST00000522515 GZMHP20718 246 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 DTYMKP23919 212 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 SSTR5P35346 364 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 DVL1P1P54792 670 aaPredicted RBP13.37□□□□□ -0.27
LSM1-204ENST00000522515 DGCR2P98153 550 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 C17orf58Q2M2W7 97 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 BTNL3Q6UXE8 466 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 MFSD4AQ8N468 514 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 C11orf42Q8N5U0 333 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 OR52I2Q8NH67 350 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 RFESDQ8TAC1 157 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 UBALD1Q8TB05 177 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 DMRTB1Q96MA1 342 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 OCSTAMPQ9BR26 566 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 ST6GALNAC5Q9BVH7 336 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 TAF9BQ9HBM6 251 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 AKIP1Q9NQ31 210 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 TAS2R3Q9NYW6 316 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 IGKV1D-8A0A087WSZ0 117 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 KBTBD11-OT1A0A1B0GTJ5 212 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 A0A1W2PPH5 198 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 ZNF729A6NN14 1252 aaPredicted RBP13.37□□□□□ -0.27
LSM1-204ENST00000522515 C15orf65H3BRN8 121 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 CTDSPLO15194 276 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 LPLP06858 475 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 OMGP23515 440 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 KRTAP1-1Q07627 177 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 C6orf183Q5T699 404 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 DCAF12L2Q5VW00 463 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 MOB1BQ7L9L4 216 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 GLCCI1Q86VQ1 547 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 PRR18Q8N4B5 295 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 ARL11Q969Q4 196 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 SCPEP1Q9HB40 452 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 CALYQ9NYX4 217 aa13.37□□□□□ -0.27
LSM1-204ENST00000522515 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.36□□□□□ -0.272e-10■■■■□ 21.5
LSM1-204ENST00000522515 GABARAPH6UMI1 98 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 SULT1C2O00338 296 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 ORC5O43913 435 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 MMP23AO75900 390 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 INHBBP09529 407 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 PTBP1P26599 531 aaKnown RBP eCLIP13.36□□□□□ -0.278e-8■■■■■ 45.8
LSM1-204ENST00000522515 PAX8Q06710 450 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 HMGN3Q15651 99 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 PYDC2Q56P42 97 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 TRAT1Q6PIZ9 186 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 Q8N7P7 452 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 SMIM4Q8WVI0 70 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 TMUB1Q9BVT8 246 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 GAL3ST2Q9H3Q3 398 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 KCNIP1Q9NZI2 227 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 KLK11Q9UBX7 282 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 OPN4Q9UHM6 478 aa13.36□□□□□ -0.27
LSM1-204ENST00000522515 C17orf98A8MV24 154 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 NPIPB11E5RHQ5 1161 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 HBZP02008 142 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 SCTP09683 121 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 GDNFP39905 211 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 CBX5P45973 191 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 HLA-DRB3P79483 266 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 MRPS10P82664 201 aaKnown RBP13.35□□□□□ -0.27
LSM1-204ENST00000522515 ZNF45Q02386 682 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 SRSF7Q16629 238 aaKnown RBP eCLIP13.35□□□□□ -0.27
LSM1-204ENST00000522515 ZNF554Q86TJ5 538 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 HOGA1Q86XE5 327 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 KIR3DL3Q8N743 410 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 OR1L1Q8NH94 360 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 FCAMRQ8WWV6 532 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 SRRQ9GZT4 340 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 SIRPDQ9H106 197 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 LINC00574Q9H8X3 128 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 ANAPC10Q9UM13 185 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 MGAT4AQ9UM21 535 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 KPTNQ9Y664 436 aa13.35□□□□□ -0.27
LSM1-204ENST00000522515 TRDCB7Z8K6 153 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 M0R1W7 72 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 SPINT2O43291 252 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 GSTT2P0CG29 244 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 GSTT2BP0CG30 244 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 CD99P14209 185 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 MMP9P14780 707 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 DLX1P56177 255 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 PRAMEF5Q5TYX0 476 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 OR52W1Q6IF63 320 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 FAHD2BQ6P2I3 314 aaPredicted RBP13.34□□□□□ -0.27
LSM1-204ENST00000522515 HEPN1Q6WQI6 88 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 Q6ZS49 121 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 BEST4Q8NFU0 473 aa13.34□□□□□ -0.27
LSM1-204ENST00000522515 SNAPC3Q92966 411 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms