RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 CSPG4Q6UVK1 2322 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 JMJD1CQ15652 2540 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 TRAV38-1A0A0B4J264 116 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 C13orf42A0A1B0GVH6 325 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 CD300LBA8K4G0 201 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 CEACAM18A8MTB9 384 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 IQCF6A8MYZ5 107 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 H0YL77 283 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 XRCC2O43543 280 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 GMDSO60547 372 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 FKBP6O75344 327 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ATP5HO75947 161 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 SEMG1P04279 462 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 CRYBA1P05813 215 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 LYNP07948 512 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 MRPL3P09001 348 aaKnown RBP2.84□□□□□ -1.95
NUP54-212ENST00000513248 OCM2P0CE71 109 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 OCMP0CE72 109 aaPredicted RBP2.84□□□□□ -1.95
NUP54-212ENST00000513248 CLUP10909 449 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ANXA8P13928 327 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 CD80P33681 288 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ATP6V1E1P36543 226 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 DDOSTP39656 456 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 NAA10P41227 235 aaPredicted RBP2.84□□□□□ -1.95
NUP54-212ENST00000513248 MAGEA2P43356 314 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 PITPNBP48739 271 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ZNF121P58317 390 aaPredicted RBP2.84□□□□□ -1.95
NUP54-212ENST00000513248 FXYD6P3P58550 94 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ACTR3P61158 418 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ESRRGP62508 458 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 HIST1H3AP68431 136 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ZNF92Q03936 586 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 BAMBIQ13145 260 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 APOFQ13790 326 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 GK2Q14410 553 aaPredicted RBP2.84□□□□□ -1.95
NUP54-212ENST00000513248 ZMYND11Q15326 602 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 TMEM155Q4W5P6 130 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 SPRNQ5BIV9 151 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 GLYATL3Q5SZD4 288 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 HIST2H3PS2Q5TEC6 136 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 TMEM236Q5W0B7 351 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 CD164L2Q6UWJ8 174 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 LRRN1Q6UXK5 716 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 Q6ZR03 302 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 HIST2H3AQ71DI3 136 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 DPY19L4Q7Z388 723 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 NAA40Q86UY6 237 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 LRRC28Q86X40 367 aaPredicted RBP2.84□□□□□ -1.95
NUP54-212ENST00000513248 C3orf56Q8N813 242 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 C19orf18Q8NEA5 215 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 OR56B2PQ8NGI1 322 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 OR8D4Q8NGM9 314 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 OR1B1Q8NGR6 318 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 OR4Q3Q8NH05 313 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 OR2AE1Q8NHA4 323 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 DNAJC9Q8WXX5 260 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 H1FXQ92522 213 aaKnown RBP2.84□□□□□ -1.95
NUP54-212ENST00000513248 PIGCQ92535 297 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ZMYND19Q96E35 227 aaPredicted RBP2.84□□□□□ -1.95
NUP54-212ENST00000513248 REEP6Q96HR9 211 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 RCHY1Q96PM5 261 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 S1PR3Q99500 378 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 SLC6A7Q99884 636 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 NIPSNAP1Q9BPW8 284 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 MICU1Q9BPX6 476 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 SLC30A2Q9BRI3 323 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 RTL8AQ9BWD3 113 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 PLA2G12AQ9BZM1 189 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 C1orf21Q9H246 121 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 RNPEPL1Q9HAU8 725 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 NTN4Q9HB63 628 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 S100A14Q9HCY8 104 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 CMC2Q9NRP2 79 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 TNFRSF19Q9NS68 423 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 MRPL22Q9NWU5 206 aaKnown RBP2.84□□□□□ -1.95
NUP54-212ENST00000513248 C1orf123Q9NWV4 160 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 DCAF16Q9NXF7 216 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 TVP23BQ9NYZ1 205 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ERVK-18Q9QC07 812 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 CLN8Q9UBY8 286 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 CYB5R1Q9UHQ9 305 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 ENOPH1Q9UHY7 261 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 IKZF2Q9UKS7 526 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 COMMD3-BMI1R4GMX3 469 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 AGRNO00468 2067 aa2.84□□□□□ -1.95
NUP54-212ENST00000513248 CCDC168Q8NDH2 2452 aa2.84□□□□□ -1.96
NUP54-212ENST00000513248 PRRC2CQ9Y520 2896 aaKnown RBP2.84□□□□□ -1.96
NUP54-212ENST00000513248 ABCA4P78363 2273 aa2.84□□□□□ -1.96
NUP54-212ENST00000513248 IGHV3OR15-7A0A075B7D8 119 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 TRAV40A0A0B4J280 105 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 BTBD17A6NE02 478 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 ARRDC5A6NEK1 342 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 RPL37AP8A6NKH3 93 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 ZNF850A8MQ14 1090 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 ZNF670-ZNF695F2Z2N8 137 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 G3V2T6 193 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 LGALS8O00214 317 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 NDUFB3O43676 98 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 NDUFA2O43678 99 aa2.83□□□□□ -1.96
NUP54-212ENST00000513248 ENSAO43768 121 aaKnown RBP2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms