RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZSCAN26Q16670 478 aa16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 RSBN1Q5VWQ0 802 aaPredicted RBP16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 C8orf31Q8N9H6 132 aa16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 OR10AC1Q8NH08 325 aa16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 EAF1Q96JC9 268 aaPredicted RBP16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 DCLRE1BQ9H816 532 aa16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 SPACA1Q9HBV2 294 aa16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 LINC00527Q9UJ94 153 aa16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 ST3GAL6Q9Y274 331 aa16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 EXOGQ9Y2C4 368 aaKnown RBP16.58■□□□□ 0.24
SQSTM1-210ENST00000506042 TRAV24A0A0B4J272 114 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 SAC3D1A6NKF1 404 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 SEC14L6B5MCN3 397 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 SSTR5P35346 364 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 SOX6P35712 828 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 GPR176Q14439 515 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 MPV17LQ2QL34 196 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 LPCAT4Q643R3 524 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 TMEM65Q6PI78 240 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 LCNL1Q6ZST4 164 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 C10orf67Q8IYJ2 551 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 ARL11Q969Q4 196 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 RAX2Q96IS3 184 aa16.57■□□□□ 0.24
SQSTM1-210ENST00000506042 J3QRE1 110 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 SPINT2O43291 252 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 ORC5O43913 435 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 ECI1P42126 302 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 TRAT1Q6PIZ9 186 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 LINC00311Q8N616 119 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 SUMF2Q8NBJ7 301 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 Q8NFD4 153 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 OR51A2Q8NGJ7 313 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 GPR148Q8TDV2 347 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 C4orf3Q8WVX3 66 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 IFT22Q9H7X7 185 aa16.56■□□□□ 0.24
SQSTM1-210ENST00000506042 GABRPO00591 440 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 RAB40BQ12829 278 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 NHLRC3Q5JS37 347 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 ATAD3CQ5T2N8 411 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 LHFPL3Q86UP9 236 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 OR52N1Q8NH53 320 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 RNF166Q96A37 237 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 TMEM138Q9NPI0 162 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 IL36GQ9NZH8 169 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 CKLFQ9UBR5 152 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 ING4Q9UNL4 249 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 ZNF256Q9Y2P7 627 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 GMPPBQ9Y5P6 360 aa16.55■□□□□ 0.24
SQSTM1-210ENST00000506042 LY86O95711 162 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 RPLP1P05386 114 aaKnown RBP16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 OR8U8P0C7N1 319 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 REG1BP48304 166 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 PIGYQ3MUY2 71 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 C6orf183Q5T699 404 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 FAM27D1Q5T7N8 215 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 RTN4IP1Q8WWV3 396 aaPredicted RBP16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 LGALS12Q96DT0 336 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 GNG12Q9UBI6 72 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 ZNF580Q9UK33 172 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 ERGIC3Q9Y282 383 aa16.54■□□□□ 0.24
SQSTM1-210ENST00000506042 AIPO00170 330 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 ALPLP05186 524 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 GTF2F2P13984 249 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 ZNF93P35789 620 aaPredicted RBP16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 ALDH3A2P51648 485 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 RBM11P57052 281 aaKnown RBP16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 CCDC58Q4VC31 144 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 RNF152Q8N8N0 203 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 PLPPR1Q8TBJ4 325 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 S1PR3Q99500 378 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 PDCD1LG2Q9BQ51 273 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 GFOD1Q9NXC2 390 aa16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 RPL36Q9Y3U8 105 aaKnown RBP16.53■□□□□ 0.24
SQSTM1-210ENST00000506042 IGHV3-72A0A0B4J1Y9 119 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 MCRIP1C9JLW8 97 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 IGHG4P01861 327 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 CHATP28329 748 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 LUMP51884 338 aaPredicted RBP16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 MED21Q13503 144 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 DIAPH2-AS1Q14236 149 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 DDI2Q5TDH0 399 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 TMPRSS11AQ6ZMR5 421 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 C18orf65Q6ZTR6 163 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 Q8N9W7 124 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 OR10K1Q8NGX5 313 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 DUX3Q96PT4 197 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 ERVK13-1Q9NX77 482 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 TRAPPC2LQ9UL33 140 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 SMAD5-AS1Q9Y6J3 95 aa16.52■□□□□ 0.24
SQSTM1-210ENST00000506042 A0A1W2PPE3 182 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 IRGMA1A4Y4 181 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 SERPINA2P20848 420 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 SOX2P48431 317 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 ZNF260Q3ZCT1 412 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 STEAP3Q658P3 488 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 ZFP1Q6P2D0 407 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 RPL22L1Q6P5R6 122 aaKnown RBP16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 ASCL4Q6XD76 172 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 TMEM106AQ96A25 262 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 MRPS24Q96EL2 167 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms