RNA–Protein interactions for RNA: ENST00000504782.5

RNF4-206, Transcript of ring finger protein 4, human

TSL 2

Gene RNF4, Length 614 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-206	ENST00000504782	EXOSC1	Q9Y3B2	195 aa	Known RBP	10.13	□□□□□ -0.79
RNF4-206	ENST00000504782	TSSC4	Q9Y5U2	329 aa	Predicted RBP	10.13	□□□□□ -0.79
RNF4-206	ENST00000504782	HSPE1-MOB4	S4R3N1	261 aa		10.13	□□□□□ -0.79
RNF4-206	ENST00000504782	SLC31A2	O15432	143 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	IGKV1D-33	P01593	117 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	IGKV1-33	P01594	117 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	CSTB	P04080	98 aa	Known RBP	10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	PF4V1	P10720	104 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	TMEM11	P17152	192 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	VHL	P40337	213 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	LOXL3	P58215	753 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	PPP3R1	P63098	170 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	MADCAM1	Q13477	382 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	RIPK1	Q13546	671 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	HES1	Q14469	280 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	NHLRC3	Q5JS37	347 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	KHDC1L	Q5JSQ8	128 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	MUL1	Q969V5	352 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	CPNE2	Q96FN4	548 aa	Predicted RBP	10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	RDH12	Q96NR8	316 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	OR14A2	Q96R54	314 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	NECAP2	Q9NVZ3	263 aa		10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	10.12	□□□□□ -0.79
RNF4-206	ENST00000504782	TRBV5-7	A0A0A0MS05	114 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	IGHV1-3	A0A0C4DH29	117 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	TMEM30CP	A0ZSE6	113 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	ZNF736	B4DX44	427 aa	Predicted RBP	10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	PIN1P1	O15428	100 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	GPX5	O75715	221 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	MT-ND4	P03905	459 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	MAS1	P04201	325 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	MYL12A	P19105	171 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	KCNJ3	P48549	501 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	KRTAP10-11	P60412	298 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	ST3GAL4	Q11206	333 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782		Q499Y3	187 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	ETV3L	Q6ZN32	361 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	OR4X2	Q8NGF9	303 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	OR10X1	Q8NGY0	326 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	ARL11	Q969Q4	196 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	BANF2	Q9H503	90 aa		10.11	□□□□□ -0.79
RNF4-206	ENST00000504782	PSMB11	A5LHX3	300 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	SDCBP	O00560	298 aa	Predicted RBP	10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	HSD17B6	O14756	317 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	MPIG6B	O95866	241 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	PF4	P02776	101 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	RAB7A	P51149	207 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	ZNF134	P52741	427 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	INSL4	Q14641	139 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	YIF1B	Q5BJH7	314 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	TTC23	Q5W5X9	447 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	GLIPR1L1	Q6UWM5	242 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	ZNF497	Q6ZNH5	498 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	REC114	Q7Z4M0	266 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	MOB3B	Q86TA1	216 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	LYPD6	Q86Y78	171 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	DHRSX	Q8N5I4	330 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	TMEM104	Q8NE00	496 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	OR10A7	Q8NGE5	316 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	OR4K15	Q8NH41	348 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	NEK7	Q8TDX7	302 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	EAF1	Q96JC9	268 aa	Predicted RBP	10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	S100A13	Q99584	98 aa		10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	MRPS28	Q9Y2Q9	187 aa	Known RBP	10.1	□□□□□ -0.79
RNF4-206	ENST00000504782	IRGM	A1A4Y4	181 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	C12orf77	C9JDV5	145 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782		K7EIL1	84 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782		M0QZK8	103 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	AIP	O00170	330 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	CCRL2	O00421	344 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	GTF2F2	P13984	249 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	FST	P19883	344 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	GZMH	P20718	246 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	HOXD3	P31249	432 aa	Predicted RBP	10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	ZNF816	Q0VGE8	651 aa	Predicted RBP	10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	EBI3	Q14213	229 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	RCN1	Q15293	331 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	MPV17L	Q2QL34	196 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	SYT6	Q5T7P8	510 aa	Predicted RBP	10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	SIGIRR	Q6IA17	410 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	SLC16A12	Q6ZSM3	486 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	LINC00596	Q86U02	117 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	OR8H3	Q8N146	312 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	JAGN1	Q8N5M9	183 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782		Q8N6K4	173 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	LINC00482	Q8N8I6	264 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	ZNF439	Q8NDP4	499 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	OR10V1	Q8NGI7	309 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	OR1L1	Q8NH94	360 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	ST6GALNAC6	Q969X2	333 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	DERL3	Q96Q80	235 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	PCDHB16	Q9NRJ7	776 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	GFOD1	Q9NXC2	390 aa		10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	RCC2	Q9P258	522 aa	Known RBP	10.09	□□□□□ -0.79
RNF4-206	ENST00000504782	WI2-2373I1.2	A0A1W2PRP0	233 aa		10.08	□□□□□ -0.8
RNF4-206	ENST00000504782	UBE2QL1	A1L167	161 aa		10.08	□□□□□ -0.8
RNF4-206	ENST00000504782	SERPINE3	A8MV23	424 aa		10.08	□□□□□ -0.8
RNF4-206	ENST00000504782	ORC5	O43913	435 aa		10.08	□□□□□ -0.8
RNF4-206	ENST00000504782	GAPDH	P04406	335 aa	Known RBP	10.08	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms