RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OR2C3Q8N628 320 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 KDF1Q8NAX2 398 aaPredicted RBP13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 RPS10P5Q9NQ39 176 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CACNA1AO00555 2505 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 IGSF23A1L1A6 192 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C7orf77A4D0Y5 90 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SERPINA7P05543 415 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SCTP09683 121 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FOXG1P55316 489 aaPredicted RBP13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 RND3P61587 244 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 GNMTQ14749 295 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 HERPUD1Q15011 391 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SRSF7Q16629 238 aaKnown RBP eCLIP13.78□□□□□ -0.22e-7■■■■□ 24.5
MSH5-SAPCD1-208ENST00000498473 DCAF12Q5T6F0 453 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SPINK14Q6IE38 97 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ZNF818PQ6ZRF7 136 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM122AQ96E09 287 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 IP6K3Q96PC2 410 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PRRG4Q9BZD6 226 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 LINC00470Q9BZP3 86 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TMPRSS5Q9H3S3 457 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SPACA1Q9HBV2 294 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 IL36RNQ9UBH0 155 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 IGKV1D-13A0A0B4J2D9 117 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF503-AS2A6NEH8 195 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MRPL33O75394 65 aaKnown RBP13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 IGKV1-13P0DP09 117 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CCL2P13500 99 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 PPP1CCP36873 323 aaKnown RBP13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 FGF12P61328 243 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SRPXP78539 464 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SSPNQ14714 243 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 C9orf135Q5VTT2 229 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TMEM182Q6ZP80 229 aaPredicted RBP13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ODF3L1Q8IXM7 274 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 C14orf144Q96I85 54 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 GPHA2Q96T91 129 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SSX3Q99909 188 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 EIF5A2Q9GZV4 153 aaKnown RBP13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MED13Q9UHV7 2174 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 BSNQ9UPA5 3926 aa13.77□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 A0A096LPE4 126 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPZ6 126 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 PRH1P02810 166 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SNRNP70P08621 437 aaKnown RBP13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 GPM6AP51674 278 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SAXO1Q8IYX7 474 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SCNM1Q9BWG6 230 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 MTCH1Q9NZJ7 389 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 UBE2J1Q9Y385 318 aaPredicted RBP13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 IGKV1-6A0A0C4DH72 117 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SLC22A20A6NK97 555 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TUSC2O75896 110 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CELA3AP09093 270 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CBR1P16152 277 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CCNOP22674 350 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 NKX2-1P43699 371 aaPredicted RBP13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 C6orf15Q6UXA7 325 aaPredicted RBP13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 GAPTQ8N292 157 aa13.76□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF724A8MTY0 619 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 HLA-HP01893 362 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 LHX2P50458 406 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CEACAM21Q3KPI0 293 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CXorf66Q5JRM2 361 aaPredicted RBP13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF695Q8IW36 515 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF561Q8N587 486 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 PLPPR1Q8TBJ4 325 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TMEM171Q8WVE6 324 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TUBA4BQ9H853 241 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 FBXO7Q9Y3I1 522 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 A0A1B0GW64 132 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 C5orf49A4QMS7 147 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TXNL1O43396 289 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SS18L1O75177 396 aaPredicted RBP13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TK1P04183 234 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 DAOP14920 347 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF44P15621 663 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 PCP4P48539 62 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 RAB2AP61019 212 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SRYQ05066 204 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 FABP9Q0Z7S8 132 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CLINT1Q14677 625 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SPIN3Q5JUX0 258 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 REC114Q7Z4M0 266 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TUSC5Q8IXB3 177 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TMEM252Q8N6L7 170 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 FAM213BQ8TBF2 198 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 SIGLEC12Q96PQ1 595 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ABHD14AQ9BUJ0 271 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 C20orf24Q9BUV8 137 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 LRFN1Q9P244 771 aa13.75□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CLEC18AA5D8T8 446 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ZNF732B4DXR9 585 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ADAM20O43506 726 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 PITX3O75364 302 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 TMEM50AO95807 157 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 COX5BP10606 129 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 NDUFB7P17568 137 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 ATP6V0CP27449 155 aa13.74□□□□□ -0.21
MSH5-SAPCD1-208ENST00000498473 CLDN18P56856 261 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms