RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ELANEP08246 267 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 SPNP16150 400 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 GPR12P47775 334 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 IRF3Q14653 427 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 NEDD8Q15843 81 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 BCL2L15Q5TBC7 163 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 RNLSQ5VYX0 342 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 KCTD20Q7Z5Y7 419 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 ZNF429Q86V71 674 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 SYS1Q8N2H4 156 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 NANOGP1Q8N7R0 232 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 ZFP41Q8N8Y5 198 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 OR2G2Q8NGZ5 317 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 TOMM40LQ969M1 308 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 RPEQ96AT9 228 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 BATF3Q9NR55 127 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 FRRS1LQ9P0K9 344 aa12.82□□□□□ -0.36
VIM-208ENST00000497849 LDLRAD4O15165 306 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 IGKV1D-33P01593 117 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 IGKV1-33P01594 117 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 GP9P14770 177 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 GLIPR1P48060 266 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 GBX2P52951 348 aaPredicted RBP12.81□□□□□ -0.36
VIM-208ENST00000497849 CFHR3Q02985 330 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 TBCEQ15813 527 aaPredicted RBP12.81□□□□□ -0.36
VIM-208ENST00000497849 TMPRSS11AQ6ZMR5 421 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 Q6ZSR3 168 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 SLC25A26Q70HW3 274 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 ELMOD2Q8IZ81 293 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 ZNF485Q8NCK3 441 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 FCGR1BQ92637 280 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 MRPL48Q96GC5 212 aaKnown RBP12.81□□□□□ -0.36
VIM-208ENST00000497849 ISYNA1Q9NPH2 558 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 ACOT13Q9NPJ3 140 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 PCDHB16Q9NRJ7 776 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 RBFOX1Q9NWB1 397 aaKnown RBP12.81□□□□□ -0.36
VIM-208ENST00000497849 ERGIC3Q9Y282 383 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 RYR1P21817 5038 aa12.81□□□□□ -0.36
VIM-208ENST00000497849 NPBWR2P48146 333 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 ALDH3B2P48448 385 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 ALKBH1Q13686 389 aaKnown RBP12.8□□□□□ -0.36
VIM-208ENST00000497849 ZNF146Q15072 292 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 UBE2V2Q15819 145 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 C17orf58Q2M2W7 97 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 OR52N1Q8NH53 320 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 OR9G1Q8NH87 305 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 GON7Q9BXV9 100 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 ABCG5Q9H222 651 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 BABAM2Q9NXR7 383 aa12.8□□□□□ -0.36
VIM-208ENST00000497849 PNMA8CA0A1B0GUJ8 204 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 OR4C45A6NMZ5 311 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 SIRPB1O00241 398 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 MYL12BO14950 172 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 IGHG4P01861 327 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 CALCBP10092 127 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 PTGFRP43088 359 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 AESQ08117 197 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 FDX2Q6P4F2 183 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 OR4D6Q8NGJ1 314 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 OR10AC1Q8NH08 325 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 MUL1Q969V5 352 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 MND1Q9BWT6 205 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 GLS2Q9UI32 602 aa12.79□□□□□ -0.36
VIM-208ENST00000497849 RBMY1BA6NDE4 496 aaKnown RBP12.78□□□□□ -0.36
VIM-208ENST00000497849 RBMY1EA6NEQ0 496 aaKnown RBP12.78□□□□□ -0.36
VIM-208ENST00000497849 DHRS7CA6NNS2 312 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 J3QR06 171 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 OR8U8P0C7N1 319 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 RBMY1DP0C7P1 496 aaKnown RBP12.78□□□□□ -0.36
VIM-208ENST00000497849 BCL3P20749 454 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 NFYBP25208 207 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 PSMB8P28062 276 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 SNU13P55769 128 aaKnown RBP12.78□□□□□ -0.36
VIM-208ENST00000497849 WNT4P56705 351 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 EBI3Q14213 229 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 UBE2UQ5VVX9 321 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 ZNF367Q7RTV3 350 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 GPR141Q7Z602 305 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 TGIF2LXQ8IUE1 241 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 FAM58AQ8N1B3 248 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 OR1N2Q8NGR9 330 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 MYOZ3Q8TDC0 251 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 KIRREL1Q96J84 757 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 PDCD1LG2Q9BQ51 273 aa12.78□□□□□ -0.36
VIM-208ENST00000497849 LIN7CQ9NUP9 197 aaKnown RBP12.78□□□□□ -0.36
VIM-208ENST00000497849 LSM2Q9Y333 95 aaKnown RBP12.78□□□□□ -0.36
VIM-208ENST00000497849 TRBV2A0A0J9YWF9 115 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 ODAMA1E959 279 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 DPPA5A6NC42 116 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 I3L521 148 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 OGG1O15527 345 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 IGHV3-7P01780 117 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 IGHV4-30-4P0DP06 118 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 PSMB9P28065 219 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 KIAA0141Q14154 515 aaPredicted RBP12.77□□□□□ -0.37
VIM-208ENST00000497849 MED22Q15528 200 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 SRSF7Q16629 238 aaKnown RBP eCLIP12.77□□□□□ -0.37
VIM-208ENST00000497849 LHFPL2Q6ZUX7 228 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 SATL1Q86VE3 508 aa12.77□□□□□ -0.37
VIM-208ENST00000497849 Q8IYB0 196 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms