RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 C14orf79Q96F83 325 aa7.1□□□□□ -1.27
USP54-215ENST00000497106 CITED4Q96RK1 184 aa7.1□□□□□ -1.27
USP54-215ENST00000497106 KIF25Q9UIL4 384 aa7.1□□□□□ -1.27
USP54-215ENST00000497106 SRRM5B3KS81 715 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 GPR37O15354 613 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 APOA2P02652 100 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 OR3A1P47881 315 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 EFNB3Q15768 340 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 PHLDA2Q53GA4 152 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 DNM1P46Q6ZS02 220 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 GLCCI1Q86VQ1 547 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 LYPD6Q86Y78 171 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 TAF9BQ9HBM6 251 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 PPP1R14DQ9NXH3 145 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 ALPK2Q86TB3 2170 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 DNAJC13O75165 2243 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 IGKV1-12A0A0C4DH73 117 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 IGHV1-69-2A0A0G2JMI3 117 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 SSX5O60225 188 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 IGKV1D-12P01611 117 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 CD55P08174 381 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 PPOXP50336 477 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 Q8TCH9 128 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 C2orf50Q96LR7 162 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 C1orf147Q96MC9 270 aaPredicted RBP7.09□□□□□ -1.27
USP54-215ENST00000497106 CNTNAP3BQ96NU0 1288 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 NARFLQ9H6Q4 476 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 ANAPC10Q9UM13 185 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 GPR132Q9UNW8 380 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 MED13Q9UHV7 2174 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 A0A0A6YYD4 124 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 DPRXA6NFQ7 191 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 C3orf80F5H4A9 247 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 SSX4O60224 188 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 TUSC2O75896 110 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 RPA2P15927 270 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 GNLYP22749 145 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 CEACAM6P40199 344 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 RPL23AP62750 156 aaKnown RBP7.09□□□□□ -1.27
USP54-215ENST00000497106 TMEM255AQ5JRV8 349 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 TLNRD1Q9H1K6 362 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 UBTD1Q9HAC8 227 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 TMEM106BQ9NUM4 274 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 MIOXQ9UGB7 285 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 PFDN2Q9UHV9 154 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 JPT1Q9UK76 154 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 AMMECR1Q9Y4X0 333 aaPredicted RBP7.09□□□□□ -1.27
USP54-215ENST00000497106 ZNF729A6NN14 1252 aaPredicted RBP7.09□□□□□ -1.27
USP54-215ENST00000497106 H0YL77 283 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 IGHV1-46P01743 117 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 SULT1A3P0DMM9 295 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 SULT1A4P0DMN0 295 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 AADACP22760 399 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 CFHR2P36980 270 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 RAB2AP61019 212 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 MEF2CQ06413 473 aaPredicted RBP7.09□□□□□ -1.27
USP54-215ENST00000497106 FAM76BQ5HYJ3 339 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 ZNF826PQ6ZT77 177 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 ZNF767PQ75MW2 155 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 OR8H1Q8NGG4 311 aa7.09□□□□□ -1.27
USP54-215ENST00000497106 SLC25A10Q9UBX3 287 aaPredicted RBP7.09□□□□□ -1.27
USP54-215ENST00000497106 PPIHO43447 177 aaKnown RBP7.08□□□□□ -1.28
USP54-215ENST00000497106 HOXB5P09067 269 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 CCL8P80075 99 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 PPP1R1AQ13522 171 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 RTL8BQ17RB0 113 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 MITD1Q8WV92 249 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 NCOR1P1Q9H4R4 102 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 MAB21L2Q9Y586 359 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 TRIM77I1YAP6 450 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 SLC33A1O00400 549 aaPredicted RBP7.08□□□□□ -1.28
USP54-215ENST00000497106 RHBDL1O75783 438 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 RPS2P15880 293 aaKnown RBP7.08□□□□□ -1.28
USP54-215ENST00000497106 MRGPRDQ8TDS7 321 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 TCTEX1D2Q8WW35 142 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 TRBV23-1A0A0A0MS06 115 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 ODAMA1E959 279 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 DAOP14920 347 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 MECP2P51608 486 aaKnown RBP7.08□□□□□ -1.28
USP54-215ENST00000497106 IAH1Q2TAA2 248 aaPredicted RBP7.08□□□□□ -1.28
USP54-215ENST00000497106 ZNF672Q499Z4 452 aaPredicted RBP7.08□□□□□ -1.28
USP54-215ENST00000497106 BRICD5Q6PL45 260 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 DCUN1D4Q92564 292 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 HDHD3Q9BSH5 251 aaPredicted RBP7.08□□□□□ -1.28
USP54-215ENST00000497106 MED12Q93074 2177 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 OR5M8Q8NGP6 311 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 MFFQ9GZY8 342 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 VSIG4Q9Y279 399 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 ZNF407Q9C0G0 2248 aa7.08□□□□□ -1.28
USP54-215ENST00000497106 C3orf85A0A1B0GTC6 90 aa7.07□□□□□ -1.28
USP54-215ENST00000497106 TEX46H3BTG2 121 aa7.07□□□□□ -1.28
USP54-215ENST00000497106 TMPRSS2O15393 492 aa7.07□□□□□ -1.28
USP54-215ENST00000497106 RND3P61587 244 aa7.07□□□□□ -1.28
USP54-215ENST00000497106 FAM209BQ5JX69 171 aa7.07□□□□□ -1.28
USP54-215ENST00000497106 DHRS11Q6UWP2 260 aa7.07□□□□□ -1.28
USP54-215ENST00000497106 MRPL30Q8TCC3 161 aaKnown RBP7.07□□□□□ -1.28
USP54-215ENST00000497106 HSD17B10Q99714 261 aaKnown RBP7.07□□□□□ -1.28
USP54-215ENST00000497106 RDH8Q9NYR8 311 aa7.07□□□□□ -1.28
USP54-215ENST00000497106 OR2F2O95006 317 aa7.07□□□□□ -1.28
USP54-215ENST00000497106 NFYBP25208 207 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms