RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 TAAR3PQ9P1P4 343 aa10.07□□□□□ -0.8
HDAC4-210ENST00000493582 LAMA1P25391 3075 aa10.07□□□□□ -0.8
HDAC4-210ENST00000493582 GRIFINA4D1Z8 144 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 TRAPPC6AO75865 159 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 NPBWR2P48146 333 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 RAB7AP51149 207 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 RBX1P62877 108 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 NSDHLQ15738 373 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 TMEM196Q5HYL7 178 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 GAPTQ8N292 157 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 CISD2Q8N5K1 135 aaKnown RBP10.06□□□□□ -0.8
HDAC4-210ENST00000493582 OR2AE1Q8NHA4 323 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 TRAPPC1Q9Y5R8 145 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 A0A1W2PNR3 127 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 NPIPB13A6NJU9 1138 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 NPIPB4C9JG80 1138 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 UMODP07911 640 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 VDAC1P21796 283 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 MLF1P58340 268 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 SRPXP78539 464 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 ARL16Q0P5N6 197 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 C9orf50Q5SZB4 431 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 FAM78BQ5VT40 261 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 ZNF295-AS1Q8N0V1 137 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 DDIT4LQ96D03 193 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 RPP25Q9BUL9 199 aaKnown RBP10.06□□□□□ -0.8
HDAC4-210ENST00000493582 FBRSQ9HAH7 460 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 SOHLH2Q9NX45 425 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 ZFP30Q9Y2G7 519 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 A0A0G2JRQ6 117 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 A0A0U1RQK1 487 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 ZNF320A2RRD8 509 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 TNFSF13O75888 250 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 COL9A1P20849 921 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 CDKN1AP38936 164 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 GRB2P62993 217 aaKnown RBP10.06□□□□□ -0.8
HDAC4-210ENST00000493582 RSPO1Q2MKA7 263 aaPredicted RBP10.06□□□□□ -0.8
HDAC4-210ENST00000493582 SLC25A47Q6Q0C1 308 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 Q6ZWC4 215 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 NUFIP2Q7Z417 695 aaKnown RBP10.06□□□□□ -0.8
HDAC4-210ENST00000493582 MRPL30Q8TCC3 161 aaKnown RBP10.06□□□□□ -0.8
HDAC4-210ENST00000493582 PLA2G2FQ9BZM2 168 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 MANBALQ9NQG1 85 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 TMEM106BQ9NUM4 274 aa10.06□□□□□ -0.8
HDAC4-210ENST00000493582 CFAP54Q96N23 3096 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 IGKV1-12A0A0C4DH73 117 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 VSTM2BA6NLU5 285 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 B4DGG1 531 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 PDGFBP01127 241 aaPredicted RBP10.05□□□□□ -0.8
HDAC4-210ENST00000493582 IGKV1D-12P01611 117 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 IGLV3-1P01715 115 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 IL3RAP26951 378 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 MMDQ15546 238 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 SNAI3Q3KNW1 292 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 TMEM41BQ5BJD5 291 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 OR13H1Q8NG92 308 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 OR4F5Q8NH21 305 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 SPPL3Q8TCT6 385 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 VN1R17PQ8TDU5 208 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 OR4F4Q96R69 305 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 ZNF442Q9H7R0 627 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 SLC39A9Q9NUM3 307 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 ST3GAL6Q9Y274 331 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 IFNA1P01562 189 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 IAPPP10997 89 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 CHRNB4P30926 498 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 TPTE2P1Q5T6R2 138 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 TCF23Q7RTU1 214 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 MRGPRX4Q96LA9 322 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 C20orf144Q9BQM9 153 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 AGMATQ9BSE5 352 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 ALKBH4Q9NXW9 302 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 WNT16Q9UBV4 365 aa10.05□□□□□ -0.8
HDAC4-210ENST00000493582 IGKV1D-13A0A0B4J2D9 117 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 A0A1W2PNV4 684 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 TNFRSF10CO14798 259 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 YPEL1O60688 119 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 IGKV1D-33P01593 117 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 IGKV1-33P01594 117 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 GYPAP02724 150 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 IGKV1-13P0DP09 117 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 KIR2DL1P43626 348 aaPredicted RBP10.04□□□□□ -0.8
HDAC4-210ENST00000493582 COL5A1-AS1Q5SY13 56 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 RPP25LQ8N5L8 163 aaKnown RBP10.04□□□□□ -0.8
HDAC4-210ENST00000493582 HLA-CQ95604 372 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 YPEL2Q96QA6 119 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 PTPRSQ13332 1948 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 IGHV3-20A0A0C4DH32 117 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 TRAF3IP2O43734 574 aaPredicted RBP10.04□□□□□ -0.8
HDAC4-210ENST00000493582 RPL15P61313 204 aaKnown RBP10.04□□□□□ -0.8
HDAC4-210ENST00000493582 SAPCD1Q5SSQ6 148 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 ETFRF1Q6IPR1 90 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 SHISA6Q6ZSJ9 500 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 TIPARPQ7Z3E1 657 aaKnown RBP10.04□□□□□ -0.8
HDAC4-210ENST00000493582 SLC22A18ASQ8N1D0 253 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 CCL28Q9NRJ3 127 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 COPS7AQ9UBW8 275 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 IGKV3D-11A0A0A0MRZ8 115 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 KIR2DS5A0A0G2JLQ3 304 aa10.04□□□□□ -0.8
HDAC4-210ENST00000493582 A0A0G2JNG1 304 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms