RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 F5H5P2 479 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 F8VZ95 297 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 TMEM250H0YL14 139 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 KLRC4-KLRK1H3BQV0 150 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 UBDO15205 165 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 RGS5O15539 181 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 COCHO43405 550 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 DEDDO75618 318 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 CDK14O94921 469 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 CPSF4O95639 269 aaKnown RBP1.03□□□□□ -2.24
CPSF3-205ENST00000489629 IGKV1D-12P01611 117 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 CTLA4P16410 223 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 CRATP43155 626 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 RAB25P57735 213 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 C1QTNF8P60827 252 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 RAB2AP61019 212 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 RHOAP61586 193 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 CASP8Q14790 479 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 EXOC3L4Q17RC7 722 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 TMEM249Q2WGJ8 235 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 FAM162BQ5T6X4 162 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 CYHR1Q6ZMK1 362 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 FUNDC1Q8IVP5 155 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 MUC15Q8N387 334 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 RPRMLQ8N4K4 120 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 C3orf22Q8N5N4 141 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 YIPF7Q8N8F6 280 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 OR4A5Q8NH83 315 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 SUN5Q8TC36 379 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 CCDC12Q8WUD4 166 aaPredicted RBP1.03□□□□□ -2.24
CPSF3-205ENST00000489629 OTUB2Q96DC9 234 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 OLFM3Q96PB7 478 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 GPR22Q99680 433 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 B9D2Q9BPU9 175 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 APOL4Q9BPW4 351 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 EBPLQ9BY08 206 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 POTEKPQ9BYX7 375 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 NDEL1Q9GZM8 345 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 GABARAPL1Q9H0R8 117 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 OR2D2Q9H210 308 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 ABCG5Q9H222 651 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 DSN1Q9H410 356 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 METTL8Q9H825 291 aaKnown RBP1.03□□□□□ -2.24
CPSF3-205ENST00000489629 IMP3Q9NV31 184 aaKnown RBP1.03□□□□□ -2.24
CPSF3-205ENST00000489629 C1orf109Q9NX04 203 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 OR5V1Q9UGF6 321 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 POMPQ9Y244 141 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 ZNF443Q9Y2A4 671 aaPredicted RBP1.03□□□□□ -2.24
CPSF3-205ENST00000489629 TRAPPC1Q9Y5R8 145 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 PUS1Q9Y606 427 aaKnown RBP eCLIP1.03□□□□□ -2.24
CPSF3-205ENST00000489629 ICOSQ9Y6W8 199 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 UNC79Q9P2D8 2635 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 RAB3GAP2Q9H2M9 1393 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 PTPRKQ15262 1439 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 SPATA31E1Q6ZUB1 1445 aa1.03□□□□□ -2.24
CPSF3-205ENST00000489629 IGKV1D-37A0A075B6S9 117 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 A6NED7 52 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 EFCAB9A8MZ26 197 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 LEUTXA8MZ59 168 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 C9J4A7 227 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 H3BMM0 161 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 I3L4J1 428 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 POLR3AO14802 1390 aaPredicted RBP1.02□□□□□ -2.25
CPSF3-205ENST00000489629 CRXO43186 299 aaPredicted RBP1.02□□□□□ -2.25
CPSF3-205ENST00000489629 CYTH3O43739 400 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 IGHV3-53P01767 116 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 IGHMP01871 453 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 HLA-AP01891 365 aaKnown RBP1.02□□□□□ -2.25
CPSF3-205ENST00000489629 SCGB1C2P0DMR2 95 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 PRPS1L1P21108 318 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 ELK4P28324 431 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 PYCR1P32322 319 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 COILP38432 576 aaPredicted RBP1.02□□□□□ -2.25
CPSF3-205ENST00000489629 ZNF83P51522 516 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 STC1P52823 247 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 MP68P56378 58 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 RAB8AP61006 207 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 FAM3AP98173 230 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 DEFA6Q01524 100 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 ZNF141Q15928 474 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 PYDC2Q56P42 97 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 TTMPQ5BVD1 217 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 MESTQ5EB52 335 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 Q6ZQT7 251 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 LYPD6Q86Y78 171 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 CRLF3Q8IUI8 442 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 CPNE9Q8IYJ1 553 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 LY6G5BQ8NDX9 201 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 NAV1Q8NEY1 1877 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 SCGB1C1Q8TD33 95 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 CHD5Q8TDI0 1954 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 DNAJB3Q8WWF6 145 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 UBE2WQ96B02 151 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 CLDN23Q96B33 292 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 IGF2BP2-AS1Q96M15 143 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 ZNF251Q9BRH9 671 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 C7orf50Q9BRJ6 194 aaKnown RBP1.02□□□□□ -2.25
CPSF3-205ENST00000489629 CHST5Q9GZS9 411 aa1.02□□□□□ -2.25
CPSF3-205ENST00000489629 ALX4Q9H161 411 aaPredicted RBP1.02□□□□□ -2.25
CPSF3-205ENST00000489629 CHMP4BQ9H444 224 aaKnown RBP1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms