RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 LYG2Q86SG7 212 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 AMZ2Q86W34 360 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 VRK2Q86Y07 508 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 OR2L13Q8N349 312 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 LRRC18Q8N456 261 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 DCAF4L2Q8NA75 395 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 UBAC2Q8NBM4 344 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 OR4F17Q8NGA8 305 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 OR9K2Q8NGE7 335 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 OR2D3Q8NGH3 330 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 OR4K15Q8NH41 348 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 PHOSPHO2Q8TCD6 241 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 LGALS14Q8TCE9 139 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 RNASEH2CQ8TDP1 164 aaKnown RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 PAQR8Q8TEZ7 354 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 PPP1R1CQ8WVI7 109 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 ASB17Q8WXJ9 295 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 FGF11Q92914 225 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 HIST1H2BAQ96A08 127 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 RBMXL1Q96E39 390 aaKnown RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 ACY3Q96HD9 319 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 C4orf36Q96KX1 117 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 MS4A4EQ96PG1 132 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 AQP10Q96PS8 301 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 OR4F4Q96R69 305 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 ARHGDIGQ99819 225 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 NDUFAF3Q9BU61 184 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 CHST5Q9GZS9 411 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 CST11Q9H112 138 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 RHBGQ9H310 441 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 TAF9BQ9HBM6 251 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 LYRM2Q9NU23 88 aaPredicted RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 FOXJ3Q9UPW0 622 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 SLC7A11Q9UPY5 501 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 PPIL1Q9Y3C6 166 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 SLC22A7Q9Y694 548 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 ZNF780BQ9Y6R6 833 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 HTTP42858 3142 aa4.17□□□□□ -1.74
USP40-213ENST00000483216 TNRC18O15417 2968 aaPredicted RBP4.17□□□□□ -1.74
USP40-213ENST00000483216 A0A087WUU8 490 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 TRBV7-9A0A0J9YWB2 115 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 OR5H1A6NKK0 313 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 SULT2B1O00204 365 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 CCL22O00626 93 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 FFAR1O14842 300 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 EMC8O43402 210 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 RPP14O95059 124 aaKnown RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 FARS2O95363 451 aaKnown RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 OPN1LWP04000 364 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 FOLR1P15328 257 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 ATF1P18846 271 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 AKT2P31751 481 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 SLC6A8P48029 635 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 H2BFSP57053 126 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 RAP1BP61224 184 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 NUTF2P61970 127 aaKnown RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 EIF2B1Q14232 305 aaKnown RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 ZNF266Q14584 549 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 CLINT1Q14677 625 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 RAB11BQ15907 218 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 ZNF791Q3KP31 576 aaPredicted RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 ACSF3Q4G176 576 aaPredicted RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 TMEM128Q5BJH2 165 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 SOHLH1Q5JUK2 328 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 PRSS54Q6PEW0 395 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 SLC16A13Q7RTY0 426 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 SLC35E3Q7Z769 313 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 SCD5Q86SK9 330 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 TMEM150AQ86TG1 271 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 ARRDC1Q8N5I2 433 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 FAM71E2Q8N5Q1 922 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 PLPP5Q8NEB5 264 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 OR1S2Q8NGQ3 325 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 OR51Q1Q8NH59 317 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 ZNF461Q8TAF7 563 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 DCUN1D4Q92564 292 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 FAM122AQ96E09 287 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 DNAJA3Q96EY1 480 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 KIR2DL4Q99706 377 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 NIPSNAP3BQ9BS92 247 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 ACTR3CQ9C0K3 210 aaPredicted RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 EIF5A2Q9GZV4 153 aaKnown RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 TLNRD1Q9H1K6 362 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 OR2AG1Q9H205 316 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 GAL3ST2Q9H3Q3 398 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 SRMSQ9H3Y6 488 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 IL26Q9NPH9 171 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 LSM7Q9UK45 103 aaKnown RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 OR52A1Q9UKL2 312 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 FARSAQ9Y285 508 aaKnown RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 OR10H1Q9Y4A9 318 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 SPACA6W5XKT8 324 aa4.16□□□□□ -1.74
USP40-213ENST00000483216 PRRC2AP48634 2157 aaKnown RBP4.16□□□□□ -1.74
USP40-213ENST00000483216 NYNRINQ9P2P1 1898 aaKnown RBP4.15□□□□□ -1.74
USP40-213ENST00000483216 MYLKQ15746 1914 aa4.15□□□□□ -1.74
USP40-213ENST00000483216 DOCK4Q8N1I0 1966 aa4.15□□□□□ -1.74
USP40-213ENST00000483216 A0A087WUJ7 227 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 A0A087WZY1 265 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 TMEM269A0A1B0GVZ9 245 aa4.15□□□□□ -1.75
USP40-213ENST00000483216 FAM230AA0A1W2PPH8 454 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms