RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 DMRTB1Q96MA1 342 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 ST6GALNAC5Q9BVH7 336 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 SCPEP1Q9HB40 452 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 Q9N2K0 584 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 MBNL3Q9NUK0 354 aaKnown RBP10.08□□□□□ -0.8
SDC1-206ENST00000482879 HIF1ANQ9NWT6 349 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 TAS2R3Q9NYW6 316 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 ONECUT1Q9UBC0 465 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 INSIG2Q9Y5U4 225 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 V9GYH0 126 aa10.08□□□□□ -0.8
SDC1-206ENST00000482879 AKAP9Q99996 3911 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 ZNF729A6NN14 1252 aaPredicted RBP10.07□□□□□ -0.8
SDC1-206ENST00000482879 SULT1C2O00338 296 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 CTDSPLO15194 276 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 LPLP06858 475 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 CGB3P0DN86 165 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 CGB7P0DN87 165 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 PTBP1P26599 531 aaKnown RBP eCLIP10.07□□□□□ -0.8
SDC1-206ENST00000482879 MRPS10P82664 201 aaKnown RBP10.07□□□□□ -0.8
SDC1-206ENST00000482879 CR1LQ2VPA4 569 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 PYDC2Q56P42 97 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 DCAF12L2Q5VW00 463 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 TRAT1Q6PIZ9 186 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 Q6ZPA2 131 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 OR52I2Q8NH67 350 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 RFESDQ8TAC1 157 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 GPX8Q8TED1 209 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 FCAMRQ8WWV6 532 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 MAFIPQ8WZ33 124 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 ARL11Q969Q4 196 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 C18orf12Q96KH6 178 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 ZNF714Q96N38 554 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 OCSTAMPQ9BR26 566 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 GAL3ST2Q9H3Q3 398 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 TAF9BQ9HBM6 251 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 IFT46Q9NQC8 304 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 CALYQ9NYX4 217 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 OPN4Q9UHM6 478 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 MGAT4AQ9UM21 535 aa10.07□□□□□ -0.8
SDC1-206ENST00000482879 ZANQ9Y493 2812 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 KBTBD11-OT1A0A1B0GTJ5 212 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 TRDCB7Z8K6 153 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 C12orf77C9JDV5 145 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 C15orf65H3BRN8 121 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 GABARAPH6UMI1 98 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 M0R1W7 72 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 ORC5O43913 435 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 FCER2P06734 321 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 INHBBP09529 407 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 CD99P14209 185 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 ZNF16P17020 682 aaPredicted RBP10.06□□□□□ -0.8
SDC1-206ENST00000482879 SSTR5P35346 364 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 DLX6P56179 175 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 DGCR2P98153 550 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 ZNF45Q02386 682 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 PAX8Q06710 450 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 ZNF79Q15937 498 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 C17orf58Q2M2W7 97 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 FAHD2BQ6P2I3 314 aaPredicted RBP10.06□□□□□ -0.8
SDC1-206ENST00000482879 C5orf24Q7Z6I8 188 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 HOGA1Q86XE5 327 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 PRR18Q8N4B5 295 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 KIR3DL3Q8N743 410 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 GVQW1Q8N7I0 195 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 UBALD1Q8TB05 177 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 S100ZQ8WXG8 99 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 FAHD2AQ96GK7 314 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 ZNF286AQ9HBT8 521 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 AKIP1Q9NQ31 210 aa10.06□□□□□ -0.8
SDC1-206ENST00000482879 OTOGQ6ZRI0 2925 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 hCG_1809904A0A1W2PP81 198 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 A0A1W2PPE2 198 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 A0A1W2PR64 198 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 A0A1W2PRV1 198 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 C17orf98A8MV24 154 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 SPINT2O43291 252 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 RBBP9O75884 186 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 HBZP02008 142 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 SCTP09683 121 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 OMGP23515 440 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 GATA3P23771 443 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 KIR2DS4P43632 304 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 ERVFRD-1P60508 538 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 HLA-DRB3P79483 266 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 KIR2DS1Q14954 304 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 HMGN3Q15651 99 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 SRSF7Q16629 238 aaKnown RBP eCLIP10.05□□□□□ -0.8
SDC1-206ENST00000482879 LTC4SQ16873 150 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 PRAMEF5Q5TYX0 476 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 METTL11BQ5VVY1 283 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 Q6ZS49 121 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 C1orf122Q6ZSJ8 110 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 ZNF554Q86TJ5 538 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 MFSD4AQ8N468 514 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 C11orf42Q8N5U0 333 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 Q8N7P7 452 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 BEST4Q8NFU0 473 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 OR1L1Q8NH94 360 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 SMIM4Q8WVI0 70 aa10.05□□□□□ -0.8
SDC1-206ENST00000482879 TMUB1Q9BVT8 246 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms