RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 PIPOXQ9P0Z9 390 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 CACNA1DQ01668 2161 aa11.94□□□□□ -0.5
USP39-207ENST00000450066 TRAV39A0A0B4J263 110 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 FAM172BPA6NC97 362 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 NPIPB11E5RHQ5 1161 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 CYB5R3P00387 301 aaPredicted RBP11.93□□□□□ -0.5
USP39-207ENST00000450066 RPS2P15880 293 aaKnown RBP11.93□□□□□ -0.5
USP39-207ENST00000450066 MUC1P15941 1255 aaPredicted RBP11.93□□□□□ -0.5
USP39-207ENST00000450066 CD80P33681 288 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 GABRA2P47869 451 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 RAP2BP61225 183 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 HMGN3Q15651 99 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 SWI5Q1ZZU3 235 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 C11orf88Q6PI97 169 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 CLEC18BQ6UXF7 455 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 OR10J5Q8NHC4 309 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 PPP1R35Q8TAP8 253 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 CASTOR1Q8WTX7 329 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 ASB13Q8WXK3 278 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 KIRREL1Q96J84 757 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 SNX22Q96L94 193 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 RANBP3Q9H6Z4 567 aaPredicted RBP11.93□□□□□ -0.5
USP39-207ENST00000450066 KCNIP1Q9NZI2 227 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 KIF25Q9UIL4 384 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 HLA-GP17693 338 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 KRBOX4Q5JUW0 171 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 FAM201AQ5SY85 155 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 TEX36Q5VZQ5 186 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 LPCAT3Q6P1A2 487 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 MUC15Q8N387 334 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 OR2T35Q8NGX2 323 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 ZNF486Q96H40 463 aaPredicted RBP11.93□□□□□ -0.5
USP39-207ENST00000450066 HYLS1Q96M11 299 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 RSRP1Q9BUV0 290 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 CHIAQ9BZP6 476 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 TAF9BQ9HBM6 251 aa11.93□□□□□ -0.5
USP39-207ENST00000450066 A0A0B4J2A0 478 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 OOEPA6NGQ2 149 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 CRYM-AS1A6NIL9 109 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 DBX1A6NMT0 343 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 K7N7A8 449 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 MGST3O14880 152 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 PIGPP57054 158 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 KCNJ8Q15842 424 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 ABCA11PQ4W5N1 156 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 STUMQ69YW2 141 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 TGIF2LYQ8IUE0 185 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 SGPP2Q8IWX5 399 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 ZNF561Q8N587 486 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 OR5M8Q8NGP6 311 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 IL1F10Q8WWZ1 152 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 SDSLQ96GA7 329 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 SHPKQ9UHJ6 478 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 PKDREJQ9NTG1 2253 aa11.92□□□□□ -0.5
USP39-207ENST00000450066 SPTBN1Q01082 2364 aaKnown RBP11.91□□□□□ -0.5
USP39-207ENST00000450066 SIX6O95475 246 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 GLIPR1P48060 266 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 LY6G6FQ5SQ64 297 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 LIN54Q6MZP7 749 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 H1FOOQ8IZA3 346 aaPredicted RBP11.91□□□□□ -0.5
USP39-207ENST00000450066 C1orf87Q8N0U7 546 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 SLC2A9Q9NRM0 540 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 OPN4Q9UHM6 478 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 ZFYVE26Q68DK2 2539 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 LRBAP50851 2863 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 DYSFO75923 2080 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 IFNA2P01563 188 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 SNRPD2P62316 118 aaKnown RBP11.91□□□□□ -0.5
USP39-207ENST00000450066 SLC9A3R2Q15599 337 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 C6orf183Q5T699 404 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 DCAF12L2Q5VW00 463 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 PRR18Q8N4B5 295 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 ZNRF1Q8ND25 227 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 COQ8AQ8NI60 647 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 RTN4IP1Q8WWV3 396 aaPredicted RBP11.91□□□□□ -0.5
USP39-207ENST00000450066 EPG5Q9HCE0 2579 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 OR2W1Q9Y3N9 320 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 MAB21L2Q9Y586 359 aa11.91□□□□□ -0.5
USP39-207ENST00000450066 TEX13DA0A0J9YY54 714 aaPredicted RBP11.9□□□□□ -0.5
USP39-207ENST00000450066 C12orf77C9JDV5 145 aa11.9□□□□□ -0.5
USP39-207ENST00000450066 GNRHRP30968 328 aa11.9□□□□□ -0.5
USP39-207ENST00000450066 TRAT1Q6PIZ9 186 aa11.9□□□□□ -0.5
USP39-207ENST00000450066 KCTD9Q7L273 389 aa11.9□□□□□ -0.5
USP39-207ENST00000450066 FAM185AQ8N0U4 392 aa11.9□□□□□ -0.5
USP39-207ENST00000450066 OR5D13Q8NGL4 314 aa11.9□□□□□ -0.5
USP39-207ENST00000450066 LURAP1Q96LR2 239 aa11.9□□□□□ -0.5
USP39-207ENST00000450066 DCAF16Q9NXF7 216 aa11.9□□□□□ -0.5
USP39-207ENST00000450066 HRNRQ86YZ3 2850 aaPredicted RBP11.9□□□□□ -0.5
USP39-207ENST00000450066 IGKV1D-13A0A0B4J2D9 117 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 B8ZZF3 427 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 G3V3Q6 166 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 TMEM178BH3BS89 294 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 RGS11O94810 467 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 HEXAP06865 529 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 IGKV1-13P0DP09 117 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 DNASE1P24855 282 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 SRSF4Q08170 494 aaKnown RBP11.9□□□□□ -0.51
USP39-207ENST00000450066 ANKRD55Q3KP44 614 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 ZNF788Q6ZQV5 615 aa11.9□□□□□ -0.51
USP39-207ENST00000450066 ZNF565Q8N9K5 539 aa11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms