RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 EDDM3BP56851 147 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 OLIG3Q7RTU3 272 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 C11orf68Q9H3H3 251 aaKnown RBP6.37□□□□□ -1.39
VPS53-204ENST00000437048 PIAS3Q9Y6X2 628 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 GPR37O15354 613 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 MAMSTRQ6ZN01 415 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 GMLQ99445 158 aa6.37□□□□□ -1.39
VPS53-204ENST00000437048 SNAI1O95863 264 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 PRTGQ2VWP7 1150 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 ATXN7L1Q9ULK2 861 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 OR11H12B2RN74 326 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 POU2F2P09086 479 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 MC5RP33032 325 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 SOX4Q06945 474 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 LRTM2Q8N967 370 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 OR11H1Q8NG94 326 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 OR11H2Q8NH07 326 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 HIST1H2BAQ96A08 127 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 MEGF10Q96KG7 1140 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 H7C1H1 209 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 CAPZBP47756 277 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 TMEM215Q68D42 235 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 C8orf82Q6P1X6 216 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 PIGTQ969N2 578 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 LIPGQ9Y5X9 500 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 LRP5O75197 1615 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 ZNF646O15015 1829 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 LAMTOR5O43504 91 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 CST7O76096 145 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 MPZL1O95297 269 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 PVRP15151 417 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 ACER2Q5QJU3 275 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 RAB1BQ9H0U4 201 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 OR51B6Q9H340 312 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 TRAV30A0A087WSZ9 112 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 PPBPP02775 128 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 HKR1P10072 659 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 SRSF4Q08170 494 aaKnown RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 ANKRD34AQ69YU3 496 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 SPPL3Q8TCT6 385 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 QTRT1Q9BXR0 403 aaKnown RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 TINAGL1Q9GZM7 467 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 A0A1W2PR48 441 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 RCC1P18754 421 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 RPS16P62249 146 aaKnown RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 ZXDAP98168 799 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 PFN4Q8NHR9 129 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 VN1R17PQ8TDU5 208 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 MAP1LC3AQ9H492 121 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 ZMAT3Q9HA38 289 aaKnown RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 A0A1W2PNV4 684 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 SIRT6Q8N6T7 355 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 MRPL38Q96DV4 380 aaKnown RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 ENSAO43768 121 aaKnown RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 PPP2CAP67775 309 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 IL11RAQ14626 422 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 RGS7BPQ6MZT1 257 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 DUSP13Q9UII6 198 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 TMEM272A0A1B0GTI8 110 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 A0A1B0GV90 55 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 NPIPB7O75200 414 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 B3GALT4O96024 378 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 PSMB5P28074 263 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 HIST1H1AQ02539 215 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 TSPAN32Q96QS1 320 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 FGF21Q9NSA1 209 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 FOXJ2Q9P0K8 574 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 THAP10Q9P2Z0 257 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 PSG9Q00887 426 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 OR1N2Q8NGR9 330 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 OR13C6PQ8NH95 151 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 TMEM222Q9H0R3 208 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 PIAS2O75928 621 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 F11P03951 625 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 PITX1P78337 314 aaPredicted RBP6.36□□□□□ -1.39
VPS53-204ENST00000437048 ZNF665Q9H7R5 613 aa6.36□□□□□ -1.39
VPS53-204ENST00000437048 A0A1B0GW64 132 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 AVPR2P30518 371 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 MARS2Q96GW9 593 aaKnown RBP6.35□□□□□ -1.39
VPS53-204ENST00000437048 NMUP48645 174 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 RHOGP84095 191 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 UBALD2Q8IYN6 164 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 CNEP1R1Q8N9A8 125 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 OR10AD1Q8NGE0 317 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 A1L4Q6 167 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 SRSF10O75494 262 aaKnown RBP6.35□□□□□ -1.39
VPS53-204ENST00000437048 KBTBD11O94819 623 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 SLC25A35Q3KQZ1 300 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 ZNF385CQ66K41 422 aaPredicted RBP6.35□□□□□ -1.39
VPS53-204ENST00000437048 ZNF355PQ9NSJ1 428 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 TRBV5-3A0A0A0MS03 114 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 CD27P26842 260 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 ASIPP42127 132 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 CYP2G1PQ6ZSU1 146 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 CBLN2Q8IUK8 224 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 OR4D9Q8NGE8 314 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 INSM2Q96T92 566 aaPredicted RBP6.35□□□□□ -1.39
VPS53-204ENST00000437048 IL17BQ9UHF5 180 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 STRCP1A6NGW2 1772 aa6.35□□□□□ -1.39
VPS53-204ENST00000437048 TMEM25Q86YD3 366 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 153.2 ms