RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 ZNF184Q99676 751 aaPredicted RBP13.53□□□□□ -0.24
TRIM39-209ENST00000428728 ZNF281Q9Y2X9 895 aa13.53□□□□□ -0.24
TRIM39-209ENST00000428728 IGHV3-43A0A0B4J1X8 118 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 SERPINE3A8MV23 424 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 SDCBPO00560 298 aaPredicted RBP13.52□□□□□ -0.25
TRIM39-209ENST00000428728 IGHV3-43DP0DP04 118 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 RIPK1Q13546 671 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 NHLRC3Q5JS37 347 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 ETV3LQ6ZN32 361 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 MOB3BQ86TA1 216 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 CHPT1Q8WUD6 406 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 CYGBQ8WWM9 190 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 ARL11Q969Q4 196 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 IFT22Q9H7X7 185 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 PAK1IP1Q9NWT1 392 aaPredicted RBP13.52□□□□□ -0.25
TRIM39-209ENST00000428728 CLEC2DQ9UHP7 191 aa13.52□□□□□ -0.25
TRIM39-209ENST00000428728 EXOSC1Q9Y3B2 195 aaKnown RBP13.52□□□□□ -0.25
TRIM39-209ENST00000428728 IGHV1-3A0A0C4DH29 117 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 IRGMA1A4Y4 181 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 NUDT19A8MXV4 375 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 C15orf65H3BRN8 121 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 K7EIL1 84 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 CCRL2O00421 344 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 OGG1O15527 345 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 FGF16O43320 207 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 HOXD3P31249 432 aaPredicted RBP13.51□□□□□ -0.25
TRIM39-209ENST00000428728 RPL23AP62750 156 aaKnown RBP13.51□□□□□ -0.25
TRIM39-209ENST00000428728 LRRC36Q1X8D7 754 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 MPV17LQ2QL34 196 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 FAM53AQ6NSI3 398 aaPredicted RBP13.51□□□□□ -0.25
TRIM39-209ENST00000428728 SLC16A12Q6ZSM3 486 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 C18orf65Q6ZTR6 163 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 SLC35E3Q7Z769 313 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 LINC00596Q86U02 117 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 LINC00482Q8N8I6 264 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 OR51D1Q8NGF3 324 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 RDH12Q96NR8 316 aa13.51□□□□□ -0.25
TRIM39-209ENST00000428728 DIMT1Q9UNQ2 313 aaKnown RBP13.51□□□□□ -0.25
TRIM39-209ENST00000428728 TRAV8-7A0A075B6U6 113 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 TRBV5-5A0A0J9YX44 114 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 PNMA8CA0A1B0GUJ8 204 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 AIPO00170 330 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 GAPDHP04406 335 aaKnown RBP13.5□□□□□ -0.25
TRIM39-209ENST00000428728 IGFBP3P17936 291 aaPredicted RBP13.5□□□□□ -0.25
TRIM39-209ENST00000428728 ZNF816Q0VGE8 651 aaPredicted RBP13.5□□□□□ -0.25
TRIM39-209ENST00000428728 C8orf86Q6ZUL3 223 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 OR2W3Q7Z3T1 314 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 KLHL30-AS1Q8NEE0 82 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 GHSRQ92847 366 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 MUL1Q969V5 352 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 BABAM2Q9NXR7 383 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 CKLFQ9UBR5 152 aa13.5□□□□□ -0.25
TRIM39-209ENST00000428728 WI2-2373I1.2A0A1W2PRP0 233 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 NCBP2LA6PVI3 153 aaKnown RBP13.49□□□□□ -0.25
TRIM39-209ENST00000428728 DUS4LO95620 317 aaKnown RBP13.49□□□□□ -0.25
TRIM39-209ENST00000428728 GTF2F2P13984 249 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 GZMHP20718 246 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 KRTAP10-11P60412 298 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 Q499Y3 187 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 DMKNQ6E0U4 476 aaPredicted RBP13.49□□□□□ -0.25
TRIM39-209ENST00000428728 ZNF497Q6ZNH5 498 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 FOXRED2Q8IWF2 684 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 MRPL41Q8IXM3 137 aaKnown RBP13.49□□□□□ -0.25
TRIM39-209ENST00000428728 STX19Q8N4C7 294 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 JAGN1Q8N5M9 183 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 EAF1Q96JC9 268 aaPredicted RBP13.49□□□□□ -0.25
TRIM39-209ENST00000428728 OR14A2Q96R54 314 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 CHCHD3Q9NX63 227 aaKnown RBP13.49□□□□□ -0.25
TRIM39-209ENST00000428728 GFOD1Q9NXC2 390 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 MRPS28Q9Y2Q9 187 aaKnown RBP13.49□□□□□ -0.25
TRIM39-209ENST00000428728 DNAH3Q8TD57 4116 aa13.49□□□□□ -0.25
TRIM39-209ENST00000428728 A0A1W2PPK0 400 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 EBAG9O00559 213 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 SLC31A2O15432 143 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 ZNF780AO75290 641 aaPredicted RBP13.48□□□□□ -0.25
TRIM39-209ENST00000428728 IGHG2P01859 326 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 FSTP19883 344 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 RPS11P62280 158 aaKnown RBP eCLIP13.48□□□□□ -0.25
TRIM39-209ENST00000428728 SLC35B1P78383 322 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 MED21Q13503 144 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 IZUMO1Q8IYV9 350 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 STPG2Q8N412 459 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 OR52M1Q8NGK5 317 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 DPF1Q92782 380 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 TMEM80Q96HE8 168 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 PGLYRP3Q96LB9 341 aa13.48□□□□□ -0.25
TRIM39-209ENST00000428728 LINC01548A6NM66 108 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 ORC5O43913 435 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 MT-ND4P03905 459 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 IL3RAP26951 378 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 THBS3P49746 956 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 GPR176Q14439 515 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 YIF1BQ5BJH7 314 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 AWAT2Q6E213 333 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 GLIPR1L1Q6UWM5 242 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 PRR18Q8N4B5 295 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 SETD9Q8NE22 299 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 OR10V1Q8NGI7 309 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 OR2T10Q8NGZ9 312 aa13.47□□□□□ -0.25
TRIM39-209ENST00000428728 OR4K15Q8NH41 348 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms