RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SIT1Q9Y3P8 196 aa8.4□□□□□ -1.06
SS18-203ENST00000415083 DCHS1Q96JQ0 3298 aa8.4□□□□□ -1.06
SS18-203ENST00000415083 DIDO1Q9BTC0 2240 aaKnown RBP8.4□□□□□ -1.06
SS18-203ENST00000415083 JMJD7P0C870 316 aa8.4□□□□□ -1.07
SS18-203ENST00000415083 WNT5AP41221 380 aa8.4□□□□□ -1.07
SS18-203ENST00000415083 RAB5CP51148 216 aa8.4□□□□□ -1.07
SS18-203ENST00000415083 NDUFA6P56556 154 aa8.4□□□□□ -1.07
SS18-203ENST00000415083 ZNF880Q6PDB4 577 aa8.4□□□□□ -1.07
SS18-203ENST00000415083 TUSC5Q8IXB3 177 aa8.4□□□□□ -1.07
SS18-203ENST00000415083 KCNE4Q8WWG9 221 aa8.4□□□□□ -1.07
SS18-203ENST00000415083 GPR146Q96CH1 333 aa8.4□□□□□ -1.07
SS18-203ENST00000415083 RHBDL1O75783 438 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 NEURL1O76050 574 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 SCAF4O95104 1147 aaKnown RBP8.39□□□□□ -1.07
SS18-203ENST00000415083 CEACAM1P13688 526 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 EIF2S3P41091 472 aaKnown RBP8.39□□□□□ -1.07
SS18-203ENST00000415083 CLDN18P56856 261 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 SRSF7Q16629 238 aaKnown RBP eCLIP8.39□□□□□ -1.07
SS18-203ENST00000415083 WDR86Q86TI4 376 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 C1QL4Q86Z23 238 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 TCTEX1D2Q8WW35 142 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 GGACTQ9BVM4 153 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 OR1A1Q9P1Q5 309 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 DNAJC13O75165 2243 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 IGKV3D-15A0A087WSY6 115 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 TGIF2-C20orf24A0A0A6YYL0 155 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 H3BP45 60 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 AP4M1O00189 453 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 TRAPPC6AO75865 159 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 OR2C1O95371 312 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 KLK3P07288 261 aaPredicted RBP8.39□□□□□ -1.07
SS18-203ENST00000415083 OTX2P32243 289 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 HERV-K104P61576 105 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 KIAA0141Q14154 515 aaPredicted RBP8.39□□□□□ -1.07
SS18-203ENST00000415083 GFI1BQ5VTD9 330 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 SPNS3Q6ZMD2 512 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 LURAP1LQ8IV03 231 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 TMEM45BQ96B21 275 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 HIPK2Q9H2X6 1198 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 PLEKHF2Q9H8W4 249 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 TCFL5Q9UL49 500 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 SLC7A11Q9UPY5 501 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 C5orf49A4QMS7 147 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 S100PP25815 95 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 CEACAM21Q3KPI0 293 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 SUMF2Q8NBJ7 301 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 OR1J1Q8NGS3 322 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 SGCZQ96LD1 299 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 ZNF391Q9UJN7 358 aa8.39□□□□□ -1.07
SS18-203ENST00000415083 GJE1A6NN92 205 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 IGKV1-5P01602 117 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 PSG2P11465 335 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 CCNOP22674 350 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FOLR3P41439 243 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 TMEM267Q0VDI3 215 aaPredicted RBP8.38□□□□□ -1.07
SS18-203ENST00000415083 TESK1Q15569 626 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 C3AR1Q16581 482 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 OR2B11Q5JQS5 317 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 PEAR1Q5VY43 1037 aaPredicted RBP8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A2PQ658T7 463 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 P4HA3Q7Z4N8 544 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 CCDC71LQ8N9Z2 235 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 C5orf30Q96GV9 206 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 POM121L2Q96KW2 1035 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 RHOVQ96L33 236 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 PFDN5Q99471 154 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 SSX3Q99909 188 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 SPRY4Q9C004 299 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 ATP23Q9Y6H3 246 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 TECTAO75443 2155 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 P04436 131 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 ZNF585BQ52M93 769 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 SOHLH1Q5JUK2 328 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 ZNF506Q5JVG8 444 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 ZNF695Q8IW36 515 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 CT55Q8WUE5 264 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 RSG1Q9BU20 258 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 UBE2J1Q9Y385 318 aaPredicted RBP8.38□□□□□ -1.07
SS18-203ENST00000415083 DMXL1Q9Y485 3027 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 A0A1W2PR80 420 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A10PA6NDY2 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A18PA6NE21 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A16PA6NEW6 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A20PA6NIJ5 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A8PA6NJQ4 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A7PA6NKC0 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A22PA8MWA6 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A12PA8MX19 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A5PA8MXJ8 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A23PA8MXZ1 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 CFIP05156 583 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A15PP0C7V4 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A13PP0C7W8 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A14PP0C7W9 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 FAM90A24PP0C7X0 464 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 GDF1P27539 372 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 DLK1P80370 383 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 SRYQ05066 204 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 PYY3Q5JQD4 70 aa8.38□□□□□ -1.07
SS18-203ENST00000415083 SPIN3Q5JUX0 258 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms