RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 PTPN13Q12923 2485 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 OR5H14A6NHG9 310 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 UBE2CO00762 179 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 HS3ST1O14792 307 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 DANCRP0C864 163 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 AKR1C2P52895 323 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 TNFAIP6P98066 277 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-202ENST00000414700 AKR1C1Q04828 323 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 IL24Q13007 206 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 PIGYQ3MUY2 71 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 SP5Q6BEB4 398 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-202ENST00000414700 LPCAT3Q6P1A2 487 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 WDR82Q6UXN9 313 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 ACOT7LQ6ZUV0 252 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 FBXL14Q8N1E6 418 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 OR51S1Q8NGJ8 323 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 KCNG3Q8TAE7 436 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 TMEM59Q9BXS4 323 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 SEC11CQ9BY50 192 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 PKIBQ9C010 78 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 SELENOIQ9C0D9 397 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 TLNRD1Q9H1K6 362 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 ATG5Q9H1Y0 275 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 DYNLRB1Q9NP97 96 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 GHRLQ9UBU3 117 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 FBLN5Q9UBX5 448 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 ABCA12Q86UK0 2595 aa13.09□□□□□ -0.31
SHMT2-202ENST00000414700 MAP1AP78559 2803 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-202ENST00000414700 FAM221AA4D161 298 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 XRCC3O43542 346 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 PTBP3O95758 552 aaKnown RBP13.08□□□□□ -0.31
SHMT2-202ENST00000414700 CSTBP04080 98 aaKnown RBP13.08□□□□□ -0.31
SHMT2-202ENST00000414700 MELTFP08582 738 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 PMELP40967 661 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 SNU13P55769 128 aaKnown RBP13.08□□□□□ -0.31
SHMT2-202ENST00000414700 SNRPEP62304 92 aaKnown RBP13.08□□□□□ -0.31
SHMT2-202ENST00000414700 HABP2Q14520 560 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-202ENST00000414700 PDCD1Q15116 288 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 C11orf87Q6NUJ2 197 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 MOGAT3Q86VF5 341 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 TMEM200AQ86VY9 491 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 ZSCAN4Q8NAM6 433 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-202ENST00000414700 OR5M8Q8NGP6 311 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 SEH1LQ96EE3 360 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 CST11Q9H112 138 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 UBTD1Q9HAC8 227 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 SEBOXQ9HB31 216 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-202ENST00000414700 COMMD9Q9P000 198 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 IL19Q9UHD0 177 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 RAB22AQ9UL26 194 aa13.08□□□□□ -0.31
SHMT2-202ENST00000414700 RNF222A6NCQ9 220 aa13.08□□□□□ -0.32
SHMT2-202ENST00000414700 GTF2F2P13984 249 aa13.08□□□□□ -0.32
SHMT2-202ENST00000414700 RAB6AP20340 208 aa13.08□□□□□ -0.32
SHMT2-202ENST00000414700 PEA15Q15121 130 aa13.08□□□□□ -0.32
SHMT2-202ENST00000414700 MKXQ8IYA7 352 aa13.08□□□□□ -0.32
SHMT2-202ENST00000414700 PTX4Q96A99 478 aa13.08□□□□□ -0.32
SHMT2-202ENST00000414700 ZMAT3Q9HA38 289 aaKnown RBP13.08□□□□□ -0.32
SHMT2-202ENST00000414700 GCM1Q9NP62 436 aa13.08□□□□□ -0.32
SHMT2-202ENST00000414700 C1orf123Q9NWV4 160 aa13.08□□□□□ -0.32
SHMT2-202ENST00000414700 IL36GQ9NZH8 169 aa13.08□□□□□ -0.32
SHMT2-202ENST00000414700 ZNF230Q9UIE0 474 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-202ENST00000414700 POLQO75417 2590 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 C5orf52A6NGY3 159 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 TRAPPC2LH3BP13 241 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 RAB27BO00194 218 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 WNT9BO14905 357 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 SOCS1O15524 211 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 ADH4P08319 380 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 PGA5P0DJD9 388 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 PAX6P26367 422 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 CAPZA1P52907 286 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 C11orf71Q6IPW1 123 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 RBMS3Q6XE24 437 aaKnown RBP13.07□□□□□ -0.32
SHMT2-202ENST00000414700 SAXO1Q8IYX7 474 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 Q96M66 194 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 CHST6Q9GZX3 395 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 MYOZ1Q9NP98 299 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-202ENST00000414700 DCAF16Q9NXF7 216 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 LAMP3Q9UQV4 416 aa13.07□□□□□ -0.32
SHMT2-202ENST00000414700 GEMIN2O14893 280 aaKnown RBP13.06□□□□□ -0.32
SHMT2-202ENST00000414700 CYB5AP00167 134 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 OR4E1P0C645 316 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 DUSP1P28562 367 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 SMCO1Q147U7 214 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 TAF9Q16594 264 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 OSR2Q8N2R0 312 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 Q8NFD4 153 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 OR51T1Q8NGJ9 327 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 MS4A5Q9H3V2 200 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 ST3GAL6Q9Y274 331 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 OR2AT4A6NND4 320 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 F5H0A9 414 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-202ENST00000414700 GABRR1P24046 479 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 GATA4P43694 442 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 ERVK11-1P61568 191 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 SSBP1Q04837 148 aaKnown RBP13.06□□□□□ -0.32
SHMT2-202ENST00000414700 NRIP2Q9BQI9 281 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 TREM1Q9NP99 234 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 MMP26Q9NRE1 261 aa13.06□□□□□ -0.32
SHMT2-202ENST00000414700 CBLN4Q9NTU7 201 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms