RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CHD3Q12873 2000 aaKnown RBP5.2□□□□□ -1.58
USP40-202ENST00000409945 TRAV6A0A075B6T7 132 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 PPIAL4EA0A075B759 164 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 A0A1B0GVG6 124 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 IFITM10A6NMD0 228 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 PPIAL4DF5H284 164 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 NDUFA2O43678 99 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 ENTPD6O75354 484 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 PTBP3O95758 552 aaKnown RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 KRT8P05787 483 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 PPIAL4FP0DN26 164 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 CA6P23280 308 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 OPRL1P41146 370 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 CD200P41217 278 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 ZNF121P58317 390 aaPredicted RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 VBP1P61758 197 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 KRTAP1-1Q07627 177 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 ARMCX4Q5H9R4 360 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 GLYATL3Q5SZD4 288 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 FAHD2BQ6P2I3 314 aaPredicted RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 FAM220AQ7Z4H9 259 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 NDNFQ8TB73 568 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 GTF3AQ92664 365 aaKnown RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 PPP1R14BQ96C90 147 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 FAHD2AQ96GK7 314 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 TMEM80Q96HE8 168 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 IL4I1Q96RQ9 567 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 MGLLQ99685 303 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 URM1Q9BTM9 101 aaKnown RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 RTL8AQ9BWD3 113 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 MND1Q9BWT6 205 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 CCDC59Q9P031 241 aaKnown RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 OR5V1Q9UGF6 321 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 STUB1Q9UNE7 303 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 PPIAL4AQ9Y536 164 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 MPC1Q9Y5U8 109 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.19□□□□□ -1.58
USP40-202ENST00000409945 TRAV38-1A0A0B4J264 116 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 TMEM269A0A1B0GVZ9 245 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 SMIM30A4D0T7 59 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 F5H5P2 479 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 M0R129 80 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 CCRL2O00421 344 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 FSTL3O95633 263 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 IGHV2-5P01817 119 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 MRPL3P09001 348 aaKnown RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 SLC2A1P11166 492 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 DBTP11182 482 aaKnown RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 HOXA1P49639 335 aaPredicted RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 NCS1P62166 190 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 ZNF92Q03936 586 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 SCN1BQ07699 218 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 HNRNPA0Q13151 305 aaKnown RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 ODF4Q2M2E3 257 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 SNAI3Q3KNW1 292 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 KLHL22Q53GT1 634 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 BTNL3Q6UXE8 466 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 LRRN1Q6UXK5 716 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 GDPGP1Q6ZNW5 385 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 Q6ZR03 302 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 PLEKHG7Q6ZR37 379 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 NAA40Q86UY6 237 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 ZNF679Q8IYX0 411 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 OR8B3Q8NGG8 313 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 OR2AE1Q8NHA4 323 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 CCDC107Q8WV48 283 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 BSCL2Q96G97 398 aaPredicted RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 OR8B2Q96RD0 313 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 PAPOLGQ9BWT3 736 aaKnown RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 SLC5A7Q9GZV3 580 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 DCSTAMPQ9H295 470 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 LPAR2Q9HBW0 351 aa5.19□□□□□ -1.58
USP40-202ENST00000409945 DIMT1Q9UNQ2 313 aaKnown RBP5.19□□□□□ -1.58
USP40-202ENST00000409945 SONP18583 2426 aaKnown RBP5.18□□□□□ -1.58
USP40-202ENST00000409945 ABCA2Q9BZC7 2435 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 JMJD1CQ15652 2540 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 A0A0U1RQV5 110 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 XKRY2A2RUG3 117 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 TMEM210A6NLX4 147 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 PRSS46E5RG02 174 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 LOC110117498-PIK3R3F6TDL0 507 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 MYL12BO14950 172 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 PRKYO43930 277 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 HLA-DPB1P04440 258 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 HSMCR30P0CW71 290 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 IGHV4-38-2P0DP08 117 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 MYL12AP19105 171 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 ALOX5APP20292 161 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 GALP22466 123 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 SLC2A5P22732 501 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 GADD45AP24522 165 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 LMO4P61968 165 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 LSM3P62310 102 aaKnown RBP5.18□□□□□ -1.58
USP40-202ENST00000409945 GNB2P62879 340 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 ACTC1P68032 377 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 ACTA1P68133 377 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 RAB40BQ12829 278 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 SPHARQ15513 63 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 OR8B8Q15620 311 aa5.18□□□□□ -1.58
USP40-202ENST00000409945 RGS21Q2M5E4 152 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms