RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 KLF13Q9Y2Y9 288 aaPredicted RBP10.42□□□□□ -0.74
SYNPO-202ENST00000394243 DNAJC13O75165 2243 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 SERTM1A2A2V5 107 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 OR4C45A6NMZ5 311 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 MT-ND6P03923 174 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 SPINK2P20155 84 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 BTF3P20290 206 aaKnown RBP10.42□□□□□ -0.74
SYNPO-202ENST00000394243 PABPC1L2AQ5JQF8 200 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 PTPMT1Q8WUK0 201 aaPredicted RBP10.42□□□□□ -0.74
SYNPO-202ENST00000394243 ONECUT1Q9UBC0 465 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 PPIL1Q9Y3C6 166 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 GAPDHP04406 335 aaKnown RBP10.42□□□□□ -0.74
SYNPO-202ENST00000394243 PSG2P11465 335 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 CAPZBP47756 277 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 MGAT2Q10469 447 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 IL19Q9UHD0 177 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 CDC42EP3Q9UKI2 254 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 OR2W1Q9Y3N9 320 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 IL2RAP01589 272 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 CEACAM5P06731 702 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 EIF3IQ13347 325 aaKnown RBP10.42□□□□□ -0.74
SYNPO-202ENST00000394243 PARLQ9H300 379 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 PEX11BO96011 259 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 PATE4P0C8F1 98 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 FOLR2P14207 255 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 CALHM1Q8IU99 346 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 C10orf111Q8N326 155 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 ZNF665Q9H7R5 613 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 CLN8Q9UBY8 286 aa10.42□□□□□ -0.74
SYNPO-202ENST00000394243 C1QAP02745 245 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 MESTQ5EB52 335 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 PRNTQ86SH4 94 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 COX6CP09669 75 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 GBGT1Q8N5D6 347 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 GUCD1Q96NT3 240 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 ANKRD36CQ5JPF3 1778 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.41□□□□□ -0.74
SYNPO-202ENST00000394243 GRIFINA4D1Z8 144 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 NPIPB9F8W1W9 429 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 SERF2P84101 59 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 TWIST1Q15672 202 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 OR2J1Q9GZK6 312 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 DNPH1O43598 174 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 TEPPQ6URK8 271 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 ZNF519Q8TB69 540 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 VSIG8P0DPA2 414 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 OR2Y1Q8NGV0 311 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 RPEQ96AT9 228 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 MEF2BQ02080 365 aaPredicted RBP10.41□□□□□ -0.74
SYNPO-202ENST00000394243 WDR31Q8NA23 367 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 ASB10Q8WXI3 467 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 HDHD3Q9BSH5 251 aaPredicted RBP10.41□□□□□ -0.74
SYNPO-202ENST00000394243 ST6GALNAC2Q9UJ37 374 aa10.41□□□□□ -0.74
SYNPO-202ENST00000394243 LDLRAD4O15165 306 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 PRF1P14222 555 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 C21orf58P58505 322 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 PIGYQ3MUY2 71 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 PEF1Q9UBV8 284 aaKnown RBP10.4□□□□□ -0.74
SYNPO-202ENST00000394243 PPP2CBP62714 309 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 KLRB1Q12918 225 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 TNXAQ16473 311 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 Q5BKY6 102 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 IBA57Q5T440 356 aaKnown RBP10.4□□□□□ -0.74
SYNPO-202ENST00000394243 SNRNP40Q96DI7 357 aaKnown RBP10.4□□□□□ -0.74
SYNPO-202ENST00000394243 GNRHR2Q96P88 292 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 SIRT4Q9Y6E7 314 aaPredicted RBP10.4□□□□□ -0.74
SYNPO-202ENST00000394243 KBTBD11O94819 623 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 HKR1P10072 659 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 CBLN3Q6UW01 205 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 PRSS41Q7RTY9 318 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 SLC36A1Q7Z2H8 476 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 KISS1RQ969F8 398 aaPredicted RBP10.4□□□□□ -0.74
SYNPO-202ENST00000394243 DNAJC4Q9NNZ3 241 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 LMX1BO60663 402 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 KIAA1644Q3SXP7 199 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 WIPI1Q5MNZ9 446 aaPredicted RBP10.4□□□□□ -0.74
SYNPO-202ENST00000394243 SOSTQ9BQB4 213 aa10.4□□□□□ -0.74
SYNPO-202ENST00000394243 DDX60Q8IY21 1712 aaKnown RBP10.4□□□□□ -0.74
SYNPO-202ENST00000394243 GLIPR1P48060 266 aa10.4□□□□□ -0.75
SYNPO-202ENST00000394243 NIT1Q86X76 327 aa10.4□□□□□ -0.75
SYNPO-202ENST00000394243 CDX2Q99626 313 aaPredicted RBP10.4□□□□□ -0.75
SYNPO-202ENST00000394243 KCNK7Q9Y2U2 307 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 HLA-DQB1P01920 261 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 AGAP20933 346 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 PMELP40967 661 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 TMEM183AQ8IXX5 376 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 UBTD1Q9HAC8 227 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 MRPS18BQ9Y676 258 aaKnown RBP10.39□□□□□ -0.75
SYNPO-202ENST00000394243 SIGLEC1Q9BZZ2 1709 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 TSPAN13O95857 204 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 HLA-DQA1P01909 254 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 SPTBP11277 2137 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 SRIP30626 198 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 HOGA1Q86XE5 327 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 OR10D3Q8NH80 312 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 ALKBH7Q9BT30 221 aaPredicted RBP10.39□□□□□ -0.75
SYNPO-202ENST00000394243 CDK5RAP2Q96SN8 1893 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 OOEPA6NGQ2 149 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 BMI1P35226 326 aa10.39□□□□□ -0.75
SYNPO-202ENST00000394243 KIR2DL1P43626 348 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms