RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 DYRK2Q92630 601 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 APOBEC3DQ96AK3 386 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-204ENST00000392003 TTTY12Q9BZ98 90 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 DEFB127Q9H1M4 99 aa8.31□□□□□ -1.08
COL6A3-204ENST00000392003 SERTM2A0A1B0GWG4 89 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 NDUFS8O00217 210 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 SIAH2O43255 324 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 CNOT4O95628 575 aaKnown RBP8.3□□□□□ -1.08
COL6A3-204ENST00000392003 FOLR2P14207 255 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 GZMHP20718 246 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 DHRS11Q6UWP2 260 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 LGI3Q8N145 548 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 MRPL24Q96A35 216 aaKnown RBP8.3□□□□□ -1.08
COL6A3-204ENST00000392003 SPSB4Q96A44 273 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 FGF16O43320 207 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 CELA3AP09093 270 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 S100A2P29034 98 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 MEOX1P50221 254 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 CLDN18P56856 261 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 PRDX4Q13162 271 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 SLC10A1Q14973 349 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 ADAM5Q6NVV9 412 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 MKXQ8IYA7 352 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 ZDHHC23Q8IYP9 409 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 TMEM251Q8N6I4 163 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 ELOVL1Q9BW60 279 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 SPRY4Q9C004 299 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 PLEKHA2Q9HB19 425 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 TAF9BQ9HBM6 251 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 CYTL1Q9NRR1 136 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 CBLN4Q9NTU7 201 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 TRAPPC2LH3BP13 241 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 TGOLN2O43493 480 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 OR5AC1P0C628 307 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 CEACAM6P40199 344 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 RNPS1Q15287 305 aaKnown RBP8.3□□□□□ -1.08
COL6A3-204ENST00000392003 SP6Q3SY56 376 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 TMPRSS7Q7RTY8 843 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 BATF2Q8N1L9 274 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 SUMF1Q8NBK3 374 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 BHLHE23Q8NDY6 225 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 OR5L1Q8NGL2 311 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 NUDT11Q96G61 164 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 DECR2Q9NUI1 292 aa8.3□□□□□ -1.08
COL6A3-204ENST00000392003 CUL9Q8IWT3 2517 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 LRP3O75074 770 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 PAX1P15863 534 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF708P17019 499 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 RCC1P18754 421 aaPredicted RBP8.29□□□□□ -1.08
COL6A3-204ENST00000392003 PMELP40967 661 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 RAB1AP62820 205 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM219AQ8IW50 185 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 EXTL1Q92935 676 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 SLC5A7Q9GZV3 580 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF581Q9P0T4 197 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 NCKAP5O14513 1909 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 A0A1W2PPQ1 181 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A10PA6NDY2 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A18PA6NE21 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A16PA6NEW6 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A20PA6NIJ5 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A8PA6NJQ4 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A7PA6NKC0 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF724A8MTY0 619 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A22PA8MWA6 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A12PA8MX19 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A5PA8MXJ8 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A23PA8MXZ1 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 RPL36A-HNRNPH2H7BZ11 118 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 JTBO76095 146 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF205O95201 554 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 SP1P08047 785 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A15PP0C7V4 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A13PP0C7W8 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A14PP0C7W9 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 FAM90A24PP0C7X0 464 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 CCL2P13500 99 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 F2RL1P55085 397 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 IL15RAQ13261 267 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 P4HA3Q7Z4N8 544 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.29□□□□□ -1.08
COL6A3-204ENST00000392003 CALHM1Q8IU99 346 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF664Q8N3J9 261 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 TMEM178AQ8NBL3 297 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 SAT2Q96F10 170 aaPredicted RBP8.29□□□□□ -1.08
COL6A3-204ENST00000392003 REPIN1Q9BWE0 567 aaKnown RBP8.29□□□□□ -1.08
COL6A3-204ENST00000392003 MMP26Q9NRE1 261 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 SLC2A9Q9NRM0 540 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 OR14J1Q9UGF5 321 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF407Q9C0G0 2248 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 DOCK10Q96BY6 2186 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 MUC3AQ02505 3323 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 SVILO95425 2214 aa8.29□□□□□ -1.08
COL6A3-204ENST00000392003 LOC102724200A0A096LPH7 203 aaPredicted RBP8.28□□□□□ -1.08
COL6A3-204ENST00000392003 BORCS7-ASMTA0A0B4J1R7 106 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 ANKRD30BLA7E2S9 258 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 ZNF732B4DXR9 585 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 E5RGE8 158 aa8.28□□□□□ -1.08
COL6A3-204ENST00000392003 PHF1O43189 567 aaPredicted RBP8.28□□□□□ -1.08
COL6A3-204ENST00000392003 CST4P01036 141 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms