RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 OR2AE1Q8NHA4 323 aa12.21□□□□□ -0.46
HMGA1-203ENST00000374116 LYPD6BQ8NI32 183 aa12.21□□□□□ -0.46
HMGA1-203ENST00000374116 TMED6Q8WW62 240 aa12.21□□□□□ -0.46
HMGA1-203ENST00000374116 PSMG3-AS1Q96PY0 264 aa12.21□□□□□ -0.46
HMGA1-203ENST00000374116 PARP11Q9NR21 331 aa12.21□□□□□ -0.46
HMGA1-203ENST00000374116 GPR132Q9UNW8 380 aa12.21□□□□□ -0.46
HMGA1-203ENST00000374116 FAM96BQ9Y3D0 163 aa12.21□□□□□ -0.46
HMGA1-203ENST00000374116 A0A1B0GWJ7 208 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 C16orf97H3BN30 126 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 PAX1P15863 534 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 NQO2P16083 231 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 VAMP1P23763 118 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 CDX1P47902 265 aaPredicted RBP12.2□□□□□ -0.46
HMGA1-203ENST00000374116 SNU13P55769 128 aaKnown RBP12.2□□□□□ -0.46
HMGA1-203ENST00000374116 ARF1P84077 181 aaKnown RBP12.2□□□□□ -0.46
HMGA1-203ENST00000374116 RBM39Q14498 530 aaKnown RBP12.2□□□□□ -0.46
HMGA1-203ENST00000374116 ATXN7L3Q14CW9 347 aaPredicted RBP12.2□□□□□ -0.46
HMGA1-203ENST00000374116 FBXL19-AS1Q494R0 122 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 TMEM42Q69YG0 159 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 LHFPL2Q6ZUX7 228 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 SSX9Q7RTT3 188 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 COMMD1Q8N668 190 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 RNASE11Q8TAA1 199 aaKnown RBP12.2□□□□□ -0.46
HMGA1-203ENST00000374116 Q96M66 194 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 WFIKKN1Q96NZ8 548 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 AQP10Q96PS8 301 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 MICU1Q9BPX6 476 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 ST6GALNAC5Q9BVH7 336 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 PKDREJQ9NTG1 2253 aa12.2□□□□□ -0.46
HMGA1-203ENST00000374116 COX5AP20674 150 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 FPR2P25090 351 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 RHEBQ15382 184 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 LRRC37A5PQ49AS3 106 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 DHRS11Q6UWP2 260 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 ASCL4Q6XD76 172 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 BHLHA15Q7RTS1 189 aaPredicted RBP12.19□□□□□ -0.46
HMGA1-203ENST00000374116 PEG10Q86TG7 708 aaKnown RBP12.19□□□□□ -0.46
HMGA1-203ENST00000374116 LHFPL1Q86WI0 220 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 ZNF565Q8N9K5 539 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 CSNK2A3Q8NEV1 391 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 KIRREL1Q96J84 757 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 C2orf88Q9BSF0 95 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 CHMP1AQ9HD42 196 aaPredicted RBP12.19□□□□□ -0.46
HMGA1-203ENST00000374116 ELOVL5Q9NYP7 299 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 DCHS2Q6V1P9 2916 aa12.19□□□□□ -0.46
HMGA1-203ENST00000374116 A0A0B4J2A0 478 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 CCSO14618 274 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 XRCC2O43543 280 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 NRASP01111 189 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 IFNA17P01571 189 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 CSTBP04080 98 aaKnown RBP12.18□□□□□ -0.46
HMGA1-203ENST00000374116 HIST1H1BP16401 226 aaKnown RBP12.18□□□□□ -0.46
HMGA1-203ENST00000374116 SULT1A2P50226 295 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 NPY4RP50391 375 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 RAB1AP62820 205 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 P2RY6Q15077 328 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 RSU1Q15404 277 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 GABRA6Q16445 453 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 PYY3Q5JQD4 70 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 SP5Q6BEB4 398 aaPredicted RBP12.18□□□□□ -0.46
HMGA1-203ENST00000374116 CASTOR1Q8WTX7 329 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 BORCS8Q96FH0 119 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 TECTBQ96PL2 329 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 SULT4A1Q9BR01 284 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 RNF126Q9BV68 326 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 PRDM13Q9H4Q3 707 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 PLEKHJ1Q9NW61 149 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 GFOD1Q9NXC2 390 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 SHPKQ9UHJ6 478 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 hCG_38984A0A1B0GV85 526 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 A0A1B0GV90 55 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 FAM230AA0A1W2PPH8 454 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 ZNF503-AS2A6NEH8 195 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 A6NLC8 198 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 CNOT4O95628 575 aaKnown RBP12.18□□□□□ -0.46
HMGA1-203ENST00000374116 SERPINA5P05154 406 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 FAM3AP98173 230 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 CHRFAM7AQ494W8 412 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 COLCA1Q6ZS62 124 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 KCTD9Q7L273 389 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 CPEB3Q8NE35 698 aaKnown RBP12.18□□□□□ -0.46
HMGA1-203ENST00000374116 OR1K1Q8NGR3 316 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 OR13G1Q8NGZ3 307 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 SEC22AQ96IW7 307 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 TMEM68Q96MH6 324 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 YPEL4Q96NS1 127 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 C5orf66Q9H5L9 145 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 RPS10P5Q9NQ39 176 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 CRIM1Q9NZV1 1036 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 DNAJB11Q9UBS4 358 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 HSF4Q9ULV5 492 aa12.18□□□□□ -0.46
HMGA1-203ENST00000374116 C7orf77A4D0Y5 90 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 TAAR5O14804 337 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 SFT2D2O95562 160 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 GABRR1P24046 479 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 CEACAM6P40199 344 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 FUT6P51993 359 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 UCP2P55851 309 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 SURF2Q15527 256 aaPredicted RBP12.17□□□□□ -0.46
HMGA1-203ENST00000374116 OR8B8Q15620 311 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms