RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ASAH2BP0C7U1 165 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 SMIM6P0DI80 62 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 ORM2P19652 201 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 G0S2P27469 103 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 ABHD3Q8WU67 409 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 FBLIM1Q8WUP2 373 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 BLNKQ8WV28 456 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 HAND1O96004 215 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 SP1P08047 785 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 OR5AL1P0C617 328 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 DLK1P80370 383 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 FAM74A3Q4VXF1 159 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 VAX1Q5SQQ9 334 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 ONECUT1Q9UBC0 465 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 MRPS18BQ9Y676 258 aaKnown RBP10□□□□□ -0.81
PTPRF-203ENST00000372407 PTPRFP10586 1907 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 CRYBA1P05813 215 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 NGFRP08138 427 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 FSTP19883 344 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 ATP6V0CP27449 155 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 ZP4Q12836 540 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 PIGYQ3MUY2 71 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 OR4A4PQ8NGN8 299 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 MS4A7Q9GZW8 240 aaPredicted RBP10□□□□□ -0.81
PTPRF-203ENST00000372407 SMDT1Q9H4I9 107 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 VSIG4Q9Y279 399 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 KLHDC2Q9Y2U9 406 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 TRAV34A0A0B4J273 112 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 IGKV1-8A0A0C4DH67 115 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 H3BQ15 152 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 FAM87AP0C7U9 286 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 ERGP11308 486 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 LIFP15018 202 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 PGLYRP3Q96LB9 341 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 RCC2Q9P258 522 aaKnown RBP9.99□□□□□ -0.81
PTPRF-203ENST00000372407 KCNK7Q9Y2U2 307 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 DSPPQ9NZW4 1301 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 BMPR1BO00238 502 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 IGKV1D-16P01601 117 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 NMBP08949 121 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 BCL3P20749 454 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 COX7A1P24310 79 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 SOX8P57073 446 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 GAMTQ14353 236 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 FAM27BQ5VT28 67 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 SPNS3Q6ZMD2 512 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 ZNF385AQ96PM9 386 aaKnown RBP9.99□□□□□ -0.81
PTPRF-203ENST00000372407 SRD5A3Q9H8P0 318 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 PPIHO43447 177 aaKnown RBP9.99□□□□□ -0.81
PTPRF-203ENST00000372407 SPINK2P20155 84 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 PDPNQ86YL7 162 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 OR2M7Q8NG81 312 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 ZNF721Q8TF20 911 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 OR10C1Q96KK4 312 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 SNX22Q96L94 193 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 GPX7Q96SL4 187 aaPredicted RBP9.99□□□□□ -0.81
PTPRF-203ENST00000372407 WDR54Q9H977 334 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 SLC2A8Q9NY64 477 aa9.99□□□□□ -0.81
PTPRF-203ENST00000372407 INTS1Q8N201 2190 aaKnown RBP9.99□□□□□ -0.81
PTPRF-203ENST00000372407 CTXND1A0A1B0GTU2 59 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 RPL36A-HNRNPH2H7BZ11 118 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 NEURL1O76050 574 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 PGA4P0DJD7 388 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 PGA5P0DJD9 388 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 VSIG10L2P0DP72 767 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 ROM1Q03395 351 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 FOXC1Q12948 553 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 HIST3H3Q16695 136 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 ANKRD55Q3KP44 614 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 HES3Q5TGS1 186 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 TGIF2LXQ8IUE1 241 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 RAB1CQ92928 201 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 AMMECR1Q9Y4X0 333 aaPredicted RBP9.98□□□□□ -0.81
PTPRF-203ENST00000372407 C21orf140B9A014 251 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 BMI1P35226 326 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 MAGEA5P43359 124 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 PSG5Q15238 335 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 KHDC3LQ587J8 217 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 OR4P4Q8NGL7 312 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 SSMEM1Q8WWF3 244 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 A0A0U1RQV5 110 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 RPL13AP40429 203 aaKnown RBP9.98□□□□□ -0.81
PTPRF-203ENST00000372407 MESP2Q0VG99 397 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 ZNF880Q6PDB4 577 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 FAM219AQ8IW50 185 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 OR52L2PQ8NGH6 319 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 ZDHHC16Q969W1 377 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 MSL2Q9HCI7 577 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 BET1LQ9NYM9 111 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 KLK13Q9UKR3 277 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 ATRXP46100 2492 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 NCOR1O75376 2440 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 A0A087X0M5 115 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 TRBV5-5A0A0J9YX44 114 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 A0A1B0GX30 115 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 TMPRSS2O15393 492 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 PAGE4O60829 102 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 GAPDHP04406 335 aaKnown RBP9.98□□□□□ -0.81
PTPRF-203ENST00000372407 DEFB124Q8NES8 71 aa9.98□□□□□ -0.81
PTPRF-203ENST00000372407 ZNF519Q8TB69 540 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms