RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 DYNLRB1Q9NP97 96 aa11.18□□□□□ -0.62
COL6A3-203ENST00000353578 LINC01549A6NIU2 74 aa11.18□□□□□ -0.62
COL6A3-203ENST00000353578 GBGT1Q8N5D6 347 aa11.18□□□□□ -0.62
COL6A3-203ENST00000353578 THOC3Q96J01 351 aaKnown RBP11.18□□□□□ -0.62
COL6A3-203ENST00000353578 CA1P00915 261 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-203ENST00000353578 ADRA2AP08913 450 aa11.18□□□□□ -0.62
COL6A3-203ENST00000353578 UQCRFS1P47985 274 aa11.18□□□□□ -0.62
COL6A3-203ENST00000353578 SOX4Q06945 474 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-203ENST00000353578 WDR25Q64LD2 544 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-203ENST00000353578 GDF1P27539 372 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 POU2AF1Q16633 256 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 RHNO1Q9BSD3 238 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 HSF5Q4G112 596 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 TRBV5-4A0A0C4DH59 114 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 A0A1B0GWB2 263 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 H0Y980 276 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 BCORP1Q8N888 145 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 ZNF257Q9Y2Q1 563 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 GJB5O95377 273 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 APOOQ9BUR5 198 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 TRGC1P0CF51 173 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 FGF5P12034 268 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 PRDX4Q13162 271 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 GNB4Q9HAV0 340 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 OBP2AQ9NY56 170 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 MEX3AA1L020 520 aaKnown RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 MARCH11A6NNE9 402 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 GNG3P63215 75 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 GUCA2AQ02747 115 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 ACER2Q5QJU3 275 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 IBA57Q5T440 356 aaKnown RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 DDX60LQ5H9U9 1706 aaKnown RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 A0A0A6YYC8 382 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 I3L1I5 382 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 ATP6V0CP27449 155 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 HOXD9P28356 352 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 EFNB1P98172 346 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 HIST1H1AQ02539 215 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 SRSF4Q08170 494 aaKnown RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 TMEM207Q6UWW9 146 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 SFXN3Q9BWM7 321 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 KLF16Q9BXK1 252 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-203ENST00000353578 IZUMO4Q1ZYL8 232 aa11.17□□□□□ -0.62
COL6A3-203ENST00000353578 PCNX2A6NKB5 2137 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 PHLPP1O60346 1717 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 TNFSF10P50591 281 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 HYAL1Q12794 435 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 CT83Q5H943 113 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 OR9G4Q8NGQ1 327 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 ZNF355PQ9NSJ1 428 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 DRD1P21728 446 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 MSL2Q9HCI7 577 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 TBL2Q9Y4P3 447 aaKnown RBP11.16□□□□□ -0.62
COL6A3-203ENST00000353578 MOSPD3O75425 235 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 OR10V1Q8NGI7 309 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 CFDP00746 253 aaPredicted RBP11.16□□□□□ -0.62
COL6A3-203ENST00000353578 OPRK1P41145 380 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 Q5PR19 223 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 ZNF880Q6PDB4 577 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 SCD5Q86SK9 330 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 WBP2Q969T9 261 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 FBXO17Q96EF6 278 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 SLC26A1Q9H2B4 701 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 MMP25Q9NPA2 562 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 H3BP45 60 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 OR1F12Q8NHA8 337 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 ZNF414Q96IQ9 312 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 PCGF1Q9BSM1 259 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 MAP1LC3AQ9H492 121 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 ODAMA1E959 279 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 DLEU1O43261 78 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 PRRX1P54821 245 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 CCL23P55773 120 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 DGAT2L7PQ6IED9 249 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 RELTQ969Z4 430 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 GLULP15104 373 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 RAB9AP51151 201 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 OR6X1Q8NH79 312 aa11.16□□□□□ -0.62
COL6A3-203ENST00000353578 PMELP40967 661 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 FAM53BQ14153 422 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 LDLRAD2Q5SZI1 272 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 SHISA4Q96DD7 197 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 CDCA3Q99618 268 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-203ENST00000353578 TIMM23BQ5SRD1 257 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 HOGA1Q86XE5 327 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 OR11H12B2RN74 326 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 RPL11P62913 178 aaKnown RBP11.15□□□□□ -0.62
COL6A3-203ENST00000353578 DNM1P46Q6ZS02 220 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 BHLHE23Q8NDY6 225 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 OR11H1Q8NG94 326 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 OR11H2Q8NH07 326 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 MVDP53602 400 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 MESTQ5EB52 335 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 WDR38Q5JTN6 314 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 CD200R1LQ6Q8B3 271 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 MOGAT3Q86VF5 341 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 SMIM8Q96KF7 97 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 NCKAP5O14513 1909 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 ATP5LO75964 103 aa11.15□□□□□ -0.62
COL6A3-203ENST00000353578 CFIP05156 583 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms