RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ZNF880Q6PDB4 577 aa18.52■□□□□ 0.56
SHMT1-202ENST00000352886 GMPPAQ96IJ6 420 aaPredicted RBP18.52■□□□□ 0.56
SHMT1-202ENST00000352886 RTL8AQ9BWD3 113 aa18.52■□□□□ 0.56
SHMT1-202ENST00000352886 CACFD1Q9UGQ2 172 aa18.52■□□□□ 0.56
SHMT1-202ENST00000352886 NDRG3Q9UGV2 375 aa18.52■□□□□ 0.56
SHMT1-202ENST00000352886 OR2W1Q9Y3N9 320 aa18.52■□□□□ 0.56
SHMT1-202ENST00000352886 DUXBA0A1W2PPF3 345 aa18.52■□□□□ 0.55
SHMT1-202ENST00000352886 H0Y980 276 aa18.52■□□□□ 0.55
SHMT1-202ENST00000352886 NFYBP25208 207 aa18.52■□□□□ 0.55
SHMT1-202ENST00000352886 SNCAP37840 140 aa18.52■□□□□ 0.55
SHMT1-202ENST00000352886 HFEQ30201 348 aa18.52■□□□□ 0.55
SHMT1-202ENST00000352886 ZNF324BQ6AW86 544 aaPredicted RBP18.52■□□□□ 0.55
SHMT1-202ENST00000352886 WDR86Q86TI4 376 aa18.52■□□□□ 0.55
SHMT1-202ENST00000352886 GCNT2Q8N0V5 402 aa18.52■□□□□ 0.55
SHMT1-202ENST00000352886 IL1F10Q8WWZ1 152 aa18.52■□□□□ 0.55
SHMT1-202ENST00000352886 OR2J1Q9GZK6 312 aa18.52■□□□□ 0.55
SHMT1-202ENST00000352886 ZNF98A6NK75 572 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 SMPD2O60906 423 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 OMGP23515 440 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 TNFSF10P50591 281 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 IDH3GP51553 393 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-202ENST00000352886 Q6P435 159 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 OR5D13Q8NGL4 314 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 AKR1E2Q96JD6 320 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 C19orf12Q9NSK7 152 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 LYRM2Q9NU23 88 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-202ENST00000352886 ERRFI1Q9UJM3 462 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-202ENST00000352886 CLEC18AA5D8T8 446 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 H7C2Y5 167 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 NXPH3O95157 252 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 ERVS71-1P61550 626 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 PPP1CBP62140 327 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 H1FOOQ8IZA3 346 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-202ENST00000352886 CLEC18CQ8NCF0 446 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 PLEKHF2Q9H8W4 249 aa18.51■□□□□ 0.55
SHMT1-202ENST00000352886 IGHV1-2P23083 117 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 F2RP25116 425 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 PPT1P50897 306 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 RAB5CP51148 216 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 UBE2NP61088 152 aaKnown RBP18.5■□□□□ 0.55
SHMT1-202ENST00000352886 VAMP2P63027 116 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 MRPL49Q13405 166 aaKnown RBP18.5■□□□□ 0.55
SHMT1-202ENST00000352886 TMEM182Q6ZP80 229 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-202ENST00000352886 TRAV39A0A0B4J263 110 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 MED19A0JLT2 244 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-202ENST00000352886 SLC33A1O00400 549 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-202ENST00000352886 LYZL6O75951 148 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 TMEM252Q8N6L7 170 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 SCCPDHQ8NBX0 429 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 ABHD14BQ96IU4 210 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 CABLES2Q9BTV7 478 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 CDH20Q9HBT6 801 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 OR1A1Q9P1Q5 309 aa18.5■□□□□ 0.55
SHMT1-202ENST00000352886 STRAPQ9Y3F4 350 aaKnown RBP18.5■□□□□ 0.55
SHMT1-202ENST00000352886 LRP5LA4QPB2 252 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 J3QW42 95 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 SIRPB1O00241 398 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 S100GP29377 79 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 FLI1Q01543 452 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-202ENST00000352886 ZNF266Q14584 549 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 OR51H1Q8NH63 302 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 PLPPR1Q8TBJ4 325 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 PRRC2CQ9Y520 2896 aaKnown RBP18.49■□□□□ 0.55
SHMT1-202ENST00000352886 IGHV3-64DA0A0J9YX35 117 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 PITX3O75364 302 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 ID3Q02535 119 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 TGFBR3Q03167 851 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 PRR18Q8N4B5 295 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 COMMD1Q8N668 190 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 TMEM171Q8WVE6 324 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 IL22RA2Q969J5 263 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 SLC25A31Q9H0C2 315 aa18.49■□□□□ 0.55
SHMT1-202ENST00000352886 PROB1E7EW31 1015 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 OR2H2O95918 312 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 UCP2P55851 309 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 SOX8P57073 446 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 GUK1Q16774 197 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 ALKBH6Q3KRA9 238 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 NKX2-8O15522 239 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 TMEM50AO95807 157 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 HOXB1P14653 301 aaPredicted RBP18.48■□□□□ 0.55
SHMT1-202ENST00000352886 SRSF6Q13247 344 aaKnown RBP18.48■□□□□ 0.55
SHMT1-202ENST00000352886 SCRT1Q9BWW7 348 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 EIF5A2Q9GZV4 153 aaKnown RBP18.48■□□□□ 0.55
SHMT1-202ENST00000352886 GLRX2Q9NS18 164 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 POLDIP2Q9Y2S7 368 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 RFNGQ9Y644 331 aa18.48■□□□□ 0.55
SHMT1-202ENST00000352886 CST7O76096 145 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 MDH2P40926 338 aaKnown RBP18.47■□□□□ 0.55
SHMT1-202ENST00000352886 ZNF154Q13106 437 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 OR10V1Q8NGI7 309 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 OR5C1Q8NGR4 320 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 SLC25A40Q8TBP6 338 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 TRIB1Q96RU8 372 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 CLCF1Q9UBD9 225 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 KPTNQ9Y664 436 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 CDIPTO14735 213 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 ATP6V0CP27449 155 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 CCL11P51671 97 aa18.47■□□□□ 0.55
SHMT1-202ENST00000352886 ERVK11-1P61568 191 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms