RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 SCRT1Q9BWW7 348 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 RIMS4Q9H426 269 aaPredicted RBP13.11□□□□□ -0.31
UPF3B-202ENST00000345865 FAM212BQ9NTI7 297 aaPredicted RBP13.11□□□□□ -0.31
UPF3B-202ENST00000345865 CLCF1Q9UBD9 225 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 NXPH3O95157 252 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 CCL11P51671 97 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 PPP1CBP62140 327 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 SPAG16Q8N0X2 631 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 SCCPDHQ8NBX0 429 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 OR1A1Q9P1Q5 309 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 BORCS7-ASMTA0A0B4J1R7 106 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 CDRT15L2A8MXV6 281 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 SLC33A1O00400 549 aaPredicted RBP13.1□□□□□ -0.31
UPF3B-202ENST00000345865 DEGS1O15121 323 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 SSSCA1O60232 199 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 NFYBP25208 207 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 ERVK11-1P61568 191 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 HLA-DRB3P79483 266 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 SWI5Q1ZZU3 235 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 MIDNQ504T8 468 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 P4HA3Q7Z4N8 544 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 PIP4P1Q86T03 277 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 H1FOOQ8IZA3 346 aaPredicted RBP13.1□□□□□ -0.31
UPF3B-202ENST00000345865 TMEM171Q8WVE6 324 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 IFT22Q9H7X7 185 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 ERRFI1Q9UJM3 462 aaPredicted RBP13.1□□□□□ -0.31
UPF3B-202ENST00000345865 OR2W1Q9Y3N9 320 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 A0A0G2JRQ6 117 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 CLEC18AA5D8T8 446 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 PROB1E7EW31 1015 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 SIRPB1O00241 398 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 IGLV2-14P01704 120 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 H2AFB1P0C5Y9 115 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 CTRB1P17538 263 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 CTRB2Q6GPI1 263 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 DHRS7BQ6IAN0 325 aaPredicted RBP13.1□□□□□ -0.31
UPF3B-202ENST00000345865 CLEC18CQ8NCF0 446 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 OR10J5Q8NHC4 309 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 UBALD1Q8TB05 177 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 IL1F10Q8WWZ1 152 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 CACFD1Q9UGQ2 172 aa13.1□□□□□ -0.31
UPF3B-202ENST00000345865 SPAARA0A1B0GVQ0 90 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 H0YL77 283 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 CDIPTO14735 213 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 OR2H2O95918 312 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 VDAC1P21796 283 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 OMGP23515 440 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 HOXA4Q00056 320 aaPredicted RBP13.09□□□□□ -0.31
UPF3B-202ENST00000345865 ID3Q02535 119 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 ZNF154Q13106 437 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 CLINT1Q14677 625 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 CMTM1Q8IZ96 169 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 DEFB124Q8NES8 71 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 SLC25A40Q8TBP6 338 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 CABLES2Q9BTV7 478 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 RTL8AQ9BWD3 113 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 PARD6AQ9NPB6 346 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 TAAR3PQ9P1P4 343 aa13.09□□□□□ -0.31
UPF3B-202ENST00000345865 H0Y980 276 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 SNAPINO95295 136 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 IGHG3P01860 377 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 F2RP25116 425 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 LMO1P25800 156 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 SNCAP37840 140 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 DVL1P1P54792 670 aaPredicted RBP13.08□□□□□ -0.31
UPF3B-202ENST00000345865 ZNF616Q08AN1 781 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 PSG7Q13046 419 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 GABRA6Q16445 453 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 HFEQ30201 348 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 PRR18Q8N4B5 295 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 TMEM252Q8N6L7 170 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 OR5D13Q8NGL4 314 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 TRIB1Q96RU8 372 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 GLRX2Q9NS18 164 aa13.08□□□□□ -0.31
UPF3B-202ENST00000345865 CNOT1A5YKK6 2376 aaKnown RBP13.08□□□□□ -0.32
UPF3B-202ENST00000345865 LRP5LA4QPB2 252 aa13.08□□□□□ -0.32
UPF3B-202ENST00000345865 UCP2P55851 309 aa13.08□□□□□ -0.32
UPF3B-202ENST00000345865 UBE2NP61088 152 aaKnown RBP13.08□□□□□ -0.32
UPF3B-202ENST00000345865 GUSBP1Q15486 140 aa13.08□□□□□ -0.32
UPF3B-202ENST00000345865 IZUMO4Q1ZYL8 232 aa13.08□□□□□ -0.32
UPF3B-202ENST00000345865 FAM122CQ6P4D5 195 aa13.08□□□□□ -0.32
UPF3B-202ENST00000345865 OR51H1Q8NH63 302 aa13.08□□□□□ -0.32
UPF3B-202ENST00000345865 ASCL3Q9NQ33 180 aa13.08□□□□□ -0.32
UPF3B-202ENST00000345865 LYRM2Q9NU23 88 aaPredicted RBP13.08□□□□□ -0.32
UPF3B-202ENST00000345865 TSPAN15O95858 294 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 MPV17P39210 176 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 TESK1Q15569 626 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 FAM214BQ7L5A3 538 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 OR1J1Q8NGS3 322 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 AKR1E2Q96JD6 320 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 SPIN2AQ99865 258 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 SPIN2BQ9BPZ2 258 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 CDH20Q9HBT6 801 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 DUXBA0A1W2PPF3 345 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 FTH1P19P0C7X4 201 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 PGA5P0DJD9 388 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 PSG2P11465 335 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 PAX9P55771 341 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 VWA1Q6PCB0 445 aa13.07□□□□□ -0.32
UPF3B-202ENST00000345865 ETV3LQ6ZN32 361 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms