RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 LGALS4P56470 323 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 FABP5Q01469 135 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 PAX5Q02548 391 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 CBX3Q13185 183 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 PRAMEF5Q5TYX0 476 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 AWAT2Q6E213 333 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 HEPN1Q6WQI6 88 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 LINC00596Q86U02 117 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 CCDC190Q86UF4 302 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 SNX29P2Q8IUI4 249 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 C3orf56Q8N813 242 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 UQCC2Q9BRT2 126 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 DPCDQ9BVM2 203 aaPredicted RBP12.82□□□□□ -0.36
CLN3-201ENST00000333496 TMEM133Q9H2Q1 129 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 GAL3ST2Q9H3Q3 398 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 TCF7L1Q9HCS4 588 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 TXNL4BQ9NX01 149 aaKnown RBP12.82□□□□□ -0.36
CLN3-201ENST00000333496 KIF25Q9UIL4 384 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 VPREB3Q9UKI3 123 aa12.82□□□□□ -0.36
CLN3-201ENST00000333496 PAIP2BQ9ULR5 123 aaKnown RBP12.82□□□□□ -0.36
CLN3-201ENST00000333496 MEGF11A6BM72 1044 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 H3BUX3 64 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 CD37P11049 281 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 GALP22466 123 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 GPR176Q14439 515 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 TRAM1Q15629 374 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 MPV17LQ2QL34 196 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 UTF1Q5T230 341 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 STEAP3Q658P3 488 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 BRICD5Q6PL45 260 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 CADM3Q8N126 398 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 TMEM104Q8NE00 496 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 OR13A1Q8NGR1 328 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 PHYHIPQ92561 330 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 BARHL1Q9BZE3 327 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 NCOR1P1Q9H4R4 102 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 BANF2Q9H503 90 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 PCDHB16Q9NRJ7 776 aa12.81□□□□□ -0.36
CLN3-201ENST00000333496 TBL2Q9Y4P3 447 aaKnown RBP12.81□□□□□ -0.36
CLN3-201ENST00000333496 MEIKINA0A087WXM9 373 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 CRYBA1P05813 215 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 FGF9P31371 208 aaPredicted RBP12.8□□□□□ -0.36
CLN3-201ENST00000333496 KCNJ3P48549 501 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 RORCP51449 518 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 RPL15P61313 204 aaKnown RBP12.8□□□□□ -0.36
CLN3-201ENST00000333496 HSD17B12Q53GQ0 312 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 C22orf42Q6IC83 251 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 POC5Q8NA72 575 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 OR5R1Q8NH85 324 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 PIFOQ8TCI5 191 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 MRPS24Q96EL2 167 aaKnown RBP12.8□□□□□ -0.36
CLN3-201ENST00000333496 OR6C3Q9NZP0 311 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 FAM172BPA6NC97 362 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 ZNF729A6NN14 1252 aaPredicted RBP12.8□□□□□ -0.36
CLN3-201ENST00000333496 NDUFA7O95182 113 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 MGMTP16455 207 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 RAG2P55895 527 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 AANATQ16613 207 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 LRRC75BQ2VPJ9 315 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 ATAD3CQ5T2N8 411 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 ZNF565Q8N9K5 539 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 SETD6Q8TBK2 473 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 MALSU1Q96EH3 234 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 CYYR1Q96J86 154 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 KCTD7Q96MP8 289 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 GFI1Q99684 422 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 CLEC7AQ9BXN2 247 aa12.8□□□□□ -0.36
CLN3-201ENST00000333496 RCC2Q9P258 522 aaKnown RBP12.8□□□□□ -0.36
CLN3-201ENST00000333496 TRRAPQ9Y4A5 3859 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 TRAV39A0A0B4J263 110 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 KBTBD11-OT1A0A1B0GTJ5 212 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 BTBD17A6NE02 478 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 IL1AP01583 271 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 APOA1P02647 267 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 GLP1RP43220 463 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 EIF2B2P49770 351 aaKnown RBP12.79□□□□□ -0.36
CLN3-201ENST00000333496 SSX2Q16385 188 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 C1orf100Q5SVJ3 147 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 SIGIRRQ6IA17 410 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 SLC35E4Q6ICL7 350 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 OR52W1Q6IF63 320 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 ABHD12Q8N2K0 398 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 OR4P4Q8NGL7 312 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 FOXRED1Q96CU9 486 aaPredicted RBP12.79□□□□□ -0.36
CLN3-201ENST00000333496 Q96M66 194 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 ZNF747Q9BV97 191 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 SELENOIQ9C0D9 397 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 LINC00574Q9H8X3 128 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 ZNF286AQ9HBT8 521 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 MMP24Q9Y5R2 645 aa12.79□□□□□ -0.36
CLN3-201ENST00000333496 A0A087X0M5 115 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 A0A1B0GX30 115 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 HAX1O00165 279 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 CRTAPO75718 401 aaPredicted RBP12.78□□□□□ -0.36
CLN3-201ENST00000333496 IGLV1-47P01700 117 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 CD34P28906 385 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 RAB13P51153 203 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 LY6EQ16553 131 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 PLA1AQ53H76 456 aa12.78□□□□□ -0.36
CLN3-201ENST00000333496 GLT8D1Q68CQ7 371 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms