RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PTX4Q96A99 478 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 ALG14Q96F25 216 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 ELF5Q9UKW6 265 aaPredicted RBP12.23□□□□□ -0.45
CSPG4-201ENST00000308508 ARHGEF17Q96PE2 2063 aaPredicted RBP12.23□□□□□ -0.45
CSPG4-201ENST00000308508 CXorf65A6NEN9 183 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 MMP16P51512 607 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 C10orf126Q8N4M7 172 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 ADAD2Q8NCV1 583 aaKnown RBP12.22□□□□□ -0.45
CSPG4-201ENST00000308508 CCL4L1Q8NHW4 92 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 DMRT1Q9Y5R6 373 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 TMEM50BP56557 158 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 C19orf54Q5BKX5 351 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 GPA33Q99795 319 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 MFRPQ9BY79 579 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 PRR13Q9NZ81 148 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 PIKFYVEQ9Y2I7 2098 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 PRRT4C9JH25 899 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 TMEM108Q6UXF1 575 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 ASB10Q8WXI3 467 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 MRGPRFQ96AM1 343 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 C1RLQ9NZP8 487 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 TRAV38-1A0A0B4J264 116 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 TRGC2P03986 189 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 GFERP55789 205 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 CCL17Q92583 94 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 TXNDC17Q9BRA2 123 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 MRM2Q9UI43 246 aaKnown RBP12.22□□□□□ -0.45
CSPG4-201ENST00000308508 LYZL6O75951 148 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 FOLR2P14207 255 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 OR6X1Q8NH79 312 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 FAM206AQ9NX38 181 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 PRICKLE4Q2TBC4 344 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 DEFB109BQ30KR1 87 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 GFRALQ6UXV0 394 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 MS4A3Q96HJ5 214 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 WFIKKN1Q96NZ8 548 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 CXorf51AA0A1B0GTR3 108 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 LEPROTL1O95214 131 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 ATP6V0CP27449 155 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 NPBWR2P48146 333 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 FRRS1LQ9P0K9 344 aa12.22□□□□□ -0.45
CSPG4-201ENST00000308508 NKX2-6A6NCS4 301 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 KBTBD11O94819 623 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 HTN1P15515 57 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 PMELP40967 661 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 ID1P41134 155 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 FZD5Q13467 585 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 ASCL5Q7RTU5 278 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 NFAM1Q8NET5 270 aaPredicted RBP12.21□□□□□ -0.45
CSPG4-201ENST00000308508 COX7A1P24310 79 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 PPP1CCP36873 323 aaKnown RBP12.21□□□□□ -0.45
CSPG4-201ENST00000308508 PAXXQ9BUH6 204 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 MUC1P15941 1255 aaPredicted RBP12.21□□□□□ -0.45
CSPG4-201ENST00000308508 CTLA4P16410 223 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 SLC52A3Q9NQ40 469 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 A0A1B0GTH9 108 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 C3orf80F5H4A9 247 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 TNFSF15O95150 251 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 RNF133Q8WVZ7 376 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 NRIP2Q9BQI9 281 aa12.21□□□□□ -0.45
CSPG4-201ENST00000308508 SHISA8B8ZZ34 492 aa12.21□□□□□ -0.46
CSPG4-201ENST00000308508 RBFOX2O43251 390 aaKnown RBP eCLIP12.21□□□□□ -0.46
CSPG4-201ENST00000308508 CEACAM5P06731 702 aa12.21□□□□□ -0.46
CSPG4-201ENST00000308508 CKS2P33552 79 aa12.21□□□□□ -0.46
CSPG4-201ENST00000308508 ZNF735P0CB33 412 aa12.21□□□□□ -0.46
CSPG4-201ENST00000308508 LSM10Q969L4 123 aaKnown RBP12.21□□□□□ -0.46
CSPG4-201ENST00000308508 MRPL24Q96A35 216 aaKnown RBP12.21□□□□□ -0.46
CSPG4-201ENST00000308508 RAXQ9Y2V3 346 aa12.21□□□□□ -0.46
CSPG4-201ENST00000308508 CABIN1Q9Y6J0 2220 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 SOCS1O15524 211 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 NUDT3O95989 172 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 RAB1BQ9H0U4 201 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 CXCL16Q9H2A7 254 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 TAF1P21675 1872 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 UBE2L6O14933 153 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 WIPI1Q5MNZ9 446 aaPredicted RBP12.2□□□□□ -0.46
CSPG4-201ENST00000308508 IBA57Q5T440 356 aaKnown RBP12.2□□□□□ -0.46
CSPG4-201ENST00000308508 LYZL2Q7Z4W2 148 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 ZNF519Q8TB69 540 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 FAM222BQ8WU58 562 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 A0A0B4J293 547 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 GAPDHP04406 335 aaKnown RBP12.2□□□□□ -0.46
CSPG4-201ENST00000308508 AMY1AP04745 511 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 MAS1LP35410 378 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 LSM6P62312 80 aaKnown RBP12.2□□□□□ -0.46
CSPG4-201ENST00000308508 SLC23A3Q6PIS1 610 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 AURKAIP1Q9NWT8 199 aaPredicted RBP12.2□□□□□ -0.46
CSPG4-201ENST00000308508 A0A1B0GV90 55 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 TMPRSS2O15393 492 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 KCNAB3O43448 404 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 HSPB1P04792 205 aaKnown RBP12.2□□□□□ -0.46
CSPG4-201ENST00000308508 HIGD1AQ9Y241 93 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 SEC16AO15027 2179 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 SKP2Q13309 424 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 FAM169BQ8N8A8 192 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 OR8B3Q8NGG8 313 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 F12P00748 615 aaPredicted RBP12.2□□□□□ -0.46
CSPG4-201ENST00000308508 GZMHP20718 246 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 FAM117AQ9C073 453 aa12.2□□□□□ -0.46
CSPG4-201ENST00000308508 UNC13CQ8NB66 2214 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms