RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 SAMD12Q8N8I0 201 aa18.27■□□□□ 0.52
HOXD4-201ENST00000306324 MRPL30Q8TCC3 161 aaKnown RBP18.27■□□□□ 0.52
HOXD4-201ENST00000306324 MS4A7Q9GZW8 240 aaPredicted RBP18.27■□□□□ 0.52
HOXD4-201ENST00000306324 HEXA-AS1Q9H8Q6 139 aa18.27■□□□□ 0.52
HOXD4-201ENST00000306324 ZNF69Q9UC07 566 aa18.27■□□□□ 0.52
HOXD4-201ENST00000306324 CUBNO60494 3623 aa18.27■□□□□ 0.51
HOXD4-201ENST00000306324 IGHV1-69DA0A0B4J2H0 117 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 A0A1W2PRD5 423 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 A0A1W2PRF3 423 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 A0A1W2PRM7 423 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 MMP23AO75900 390 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 SCGNO76038 276 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 IGHV1-69P01742 117 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 CGB3P0DN86 165 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 CGB7P0DN87 165 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 HIST1H1DP16402 221 aaKnown RBP18.26■□□□□ 0.51
HOXD4-201ENST00000306324 ZNF182P17025 639 aaPredicted RBP18.26■□□□□ 0.51
HOXD4-201ENST00000306324 RCC1P18754 421 aaPredicted RBP18.26■□□□□ 0.51
HOXD4-201ENST00000306324 GZMHP20718 246 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 SOX6P35712 828 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 GUCA2AQ02747 115 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 HEPN1Q6WQI6 88 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 RFESDQ8TAC1 157 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 SETD6Q8TBK2 473 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 ACOT12Q8WYK0 555 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 AP3S1Q92572 193 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 HDHD3Q9BSH5 251 aaPredicted RBP18.26■□□□□ 0.51
HOXD4-201ENST00000306324 KCNK7Q9Y2U2 307 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 SESN1Q9Y6P5 492 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 MRPS15P82914 257 aaKnown RBP18.26■□□□□ 0.51
HOXD4-201ENST00000306324 SCGB2A2Q13296 93 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 LTC4SQ16873 150 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 UBE2NLQ5JXB2 153 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 UBALD1Q8TB05 177 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 ARL11Q969Q4 196 aa18.26■□□□□ 0.51
HOXD4-201ENST00000306324 CMSS1Q9BQ75 279 aaKnown RBP18.26■□□□□ 0.51
HOXD4-201ENST00000306324 MFNGO00587 321 aa18.25■□□□□ 0.51
HOXD4-201ENST00000306324 NFYBP25208 207 aa18.25■□□□□ 0.51
HOXD4-201ENST00000306324 GDNFP39905 211 aa18.25■□□□□ 0.51
HOXD4-201ENST00000306324 C6orf183Q5T699 404 aa18.25■□□□□ 0.51
HOXD4-201ENST00000306324 HCP5Q6MZN7 132 aa18.25■□□□□ 0.51
HOXD4-201ENST00000306324 PNKDQ8N490 385 aa18.25■□□□□ 0.51
HOXD4-201ENST00000306324 PRR18Q8N4B5 295 aa18.25■□□□□ 0.51
HOXD4-201ENST00000306324 SUCNR1Q9BXA5 334 aa18.25■□□□□ 0.51
HOXD4-201ENST00000306324 RBM38Q9H0Z9 239 aaKnown RBP18.25■□□□□ 0.51
HOXD4-201ENST00000306324 RSL24D1Q9UHA3 163 aaKnown RBP18.25■□□□□ 0.51
HOXD4-201ENST00000306324 JMJD1CQ15652 2540 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 FAM172BPA6NC97 362 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 NAPSAO96009 420 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 CD3GP09693 182 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 FPR2P25090 351 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 UBE2E1P51965 193 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 ARL6IP1Q15041 203 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 CDNFQ49AH0 187 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 OR52W1Q6IF63 320 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 MZT2AQ6P582 158 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 BAIAP2L2Q6UXY1 529 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 BCL6BQ8N143 479 aaPredicted RBP18.24■□□□□ 0.51
HOXD4-201ENST00000306324 OR13D1Q8NGV5 346 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 DYNC2LI1Q8TCX1 351 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 KIRREL1Q96J84 757 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 TMEM133Q9H2Q1 129 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 RIMS4Q9H426 269 aaPredicted RBP18.24■□□□□ 0.51
HOXD4-201ENST00000306324 C12orf4Q9NQ89 552 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 DIABLOQ9NR28 239 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 IDI2-AS1Q9NZ38 188 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 KCNIP1Q9NZI2 227 aa18.24■□□□□ 0.51
HOXD4-201ENST00000306324 SOX21Q9Y651 276 aaPredicted RBP18.24■□□□□ 0.51
HOXD4-201ENST00000306324 SERPINE3A8MV23 424 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 C12orf77C9JDV5 145 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 NPIPB11E5RHQ5 1161 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 ORC5O43913 435 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 BPIFB3P59826 476 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 DYNC1I2Q13409 638 aaKnown RBP18.23■□□□□ 0.51
HOXD4-201ENST00000306324 ARFRP1Q13795 201 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 TRAT1Q6PIZ9 186 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 S100A16Q96FQ6 103 aaKnown RBP18.23■□□□□ 0.51
HOXD4-201ENST00000306324 ABCG5Q9H222 651 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 OCEL1Q9H607 264 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 TAF9BQ9HBM6 251 aa18.23■□□□□ 0.51
HOXD4-201ENST00000306324 MBNL3Q9NUK0 354 aaKnown RBP18.23■□□□□ 0.51
HOXD4-201ENST00000306324 ELF5Q9UKW6 265 aaPredicted RBP18.23■□□□□ 0.51
HOXD4-201ENST00000306324 TRAV18A0A075B6X5 111 aa18.22■□□□□ 0.51
HOXD4-201ENST00000306324 C15orf65H3BRN8 121 aa18.22■□□□□ 0.51
HOXD4-201ENST00000306324 NPFFO15130 113 aa18.22■□□□□ 0.51
HOXD4-201ENST00000306324 PIP4P2Q8N4L2 257 aa18.22■□□□□ 0.51
HOXD4-201ENST00000306324 SLC6A7Q99884 636 aa18.22■□□□□ 0.51
HOXD4-201ENST00000306324 LINC00574Q9H8X3 128 aa18.22■□□□□ 0.51
HOXD4-201ENST00000306324 A0A0A6YYH2 397 aa18.21■□□□□ 0.51
HOXD4-201ENST00000306324 IGHV2-26A0A0B4J1V2 119 aa18.21■□□□□ 0.51
HOXD4-201ENST00000306324 A6NJ64 397 aa18.21■□□□□ 0.51
HOXD4-201ENST00000306324 SPINT2O43291 252 aa18.21■□□□□ 0.51
HOXD4-201ENST00000306324 HPGDSO60760 199 aa18.21■□□□□ 0.51
HOXD4-201ENST00000306324 EIF4EP06730 217 aaKnown RBP18.21■□□□□ 0.51
HOXD4-201ENST00000306324 Q6ZPA2 131 aa18.21■□□□□ 0.51
HOXD4-201ENST00000306324 IZUMO1Q8IYV9 350 aa18.21■□□□□ 0.51
HOXD4-201ENST00000306324 DTX3Q8N9I9 347 aa18.21■□□□□ 0.51
HOXD4-201ENST00000306324 RAB9BQ9NP90 201 aa18.21■□□□□ 0.51
HOXD4-201ENST00000306324 CCDC59Q9P031 241 aaKnown RBP18.21■□□□□ 0.51
HOXD4-201ENST00000306324 MEIOCA2RUB1 952 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms