RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 K7EPK0 472 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 M0R1B8 84 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 ABCD4O14678 606 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 RPL12P30050 165 aaKnown RBP14.27□□□□□ -0.12
CPSF4-201ENST00000292476 ZNF83P51522 516 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 RPS23P62266 143 aaKnown RBP14.27□□□□□ -0.12
CPSF4-201ENST00000292476 BLOC1S1P78537 153 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 DEFA5Q01523 94 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 SPATA46Q5T0L3 261 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 MBNL2Q5VZF2 373 aaKnown RBP14.27□□□□□ -0.12
CPSF4-201ENST00000292476 TMEM268Q5VZI3 342 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 FAM122CQ6P4D5 195 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 ATRAIDQ6UW56 229 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 FAM71E2Q8N5Q1 922 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 TAF9BQ9HBM6 251 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 NGBQ9NPG2 151 aa14.27□□□□□ -0.12
CPSF4-201ENST00000292476 ZNF705EA8MWA4 302 aaPredicted RBP14.26□□□□□ -0.13
CPSF4-201ENST00000292476 ZNF732B4DXR9 585 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 E5RGE8 158 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 KITLGP21583 273 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 SULT1A2P50226 295 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 SRPXP78539 464 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 MZT1Q08AG7 82 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 MST1LQ2TV78 715 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 PIGYQ3MUY2 71 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 SLC22A25Q6T423 547 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 TMEM108Q6UXF1 575 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 LIAT1Q6ZQX7 453 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 SPAG16Q8N0X2 631 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 LGI3Q8N145 548 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 ZNF611Q8N823 705 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 RTN4IP1Q8WWV3 396 aaPredicted RBP14.26□□□□□ -0.13
CPSF4-201ENST00000292476 RSRP1Q9BUV0 290 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 LIME1Q9H400 295 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 ERRFI1Q9UJM3 462 aaPredicted RBP14.26□□□□□ -0.13
CPSF4-201ENST00000292476 NSG2Q9Y328 171 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 COL12A1Q99715 3063 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 CLEC18AA5D8T8 446 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 CCL21O00585 134 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 TOR1AO14656 332 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 PLATP00750 562 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 CTRB1P17538 263 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 CHRNB4P30926 498 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 HAAOP46952 286 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 ASCL1P50553 236 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 GPM6AP51674 278 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 PSG7Q13046 419 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 CTRB2Q6GPI1 263 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 UBAC2Q8NBM4 344 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 CLEC18CQ8NCF0 446 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 CLRN3Q8NCR9 226 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 OR8G5Q8NG78 346 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 HPSE2Q8WWQ2 592 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 MRPL24Q96A35 216 aaKnown RBP14.26□□□□□ -0.13
CPSF4-201ENST00000292476 C18orf12Q96KH6 178 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 TSNAXQ99598 290 aaKnown RBP14.26□□□□□ -0.13
CPSF4-201ENST00000292476 PKIBQ9C010 78 aa14.26□□□□□ -0.13
CPSF4-201ENST00000292476 FBXO9Q9UK97 447 aaPredicted RBP14.26□□□□□ -0.13
CPSF4-201ENST00000292476 RNF224P0DH78 156 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 CA6P23280 308 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 PTAFRP25105 342 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 FCGR2CP31995 323 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 GLRXP35754 106 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 HERV-K104P61576 105 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 GPR157Q5UAW9 335 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 SLC25A26Q70HW3 274 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 SEC11CQ9BY50 192 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 ARV1Q9H2C2 271 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 PLK3Q9H4B4 646 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 SLC2A9Q9NRM0 540 aa14.25□□□□□ -0.13
CPSF4-201ENST00000292476 PURGQ9UJV8 347 aaKnown RBP14.25□□□□□ -0.13
CPSF4-201ENST00000292476 DOPEY2Q9Y3R5 2298 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 USP9XQ93008 2570 aaPredicted RBP14.24□□□□□ -0.13
CPSF4-201ENST00000292476 TMEM210A6NLX4 147 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 OR5AC1P0C628 307 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 DUSP1P28562 367 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 CAV2P51636 162 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 SELENOVP59797 346 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 IL24Q13007 206 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 IL13RA2Q14627 380 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 MPV17LQ2QL34 196 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 RPL7L1Q6DKI1 246 aaKnown RBP14.24□□□□□ -0.13
CPSF4-201ENST00000292476 LINC00596Q86U02 117 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 OR4A4PQ8NGN8 299 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 TOMM40LQ969M1 308 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 PARP11Q9NR21 331 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 TMED3Q9Y3Q3 217 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 DIDO1Q9BTC0 2240 aaKnown RBP14.24□□□□□ -0.13
CPSF4-201ENST00000292476 MYO7BQ6PIF6 2116 aa14.24□□□□□ -0.13
CPSF4-201ENST00000292476 LRP5LA4QPB2 252 aa14.23□□□□□ -0.13
CPSF4-201ENST00000292476 TRAPPC2LH3BP13 241 aa14.23□□□□□ -0.13
CPSF4-201ENST00000292476 TIMM8AO60220 97 aaPredicted RBP14.23□□□□□ -0.13
CPSF4-201ENST00000292476 H2AFB1P0C5Y9 115 aa14.23□□□□□ -0.13
CPSF4-201ENST00000292476 ERVS71-1P61550 626 aa14.23□□□□□ -0.13
CPSF4-201ENST00000292476 RND3P61587 244 aa14.23□□□□□ -0.13
CPSF4-201ENST00000292476 OR8G1Q15617 311 aa14.23□□□□□ -0.13
CPSF4-201ENST00000292476 FBXL19-AS1Q494R0 122 aa14.23□□□□□ -0.13
CPSF4-201ENST00000292476 C4orf17Q53FE4 359 aa14.23□□□□□ -0.13
CPSF4-201ENST00000292476 MSI2Q96DH6 328 aaKnown RBP14.23□□□□□ -0.13
CPSF4-201ENST00000292476 AIFM2Q9BRQ8 373 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms