RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 NKX2-1P43699 371 aaPredicted RBP9.11□□□□□ -0.95
USP28-201ENST00000003302 RPS10P46783 165 aaKnown RBP9.11□□□□□ -0.95
USP28-201ENST00000003302 GATAD1Q8WUU5 269 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 MUCL1Q96DR8 90 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 SLC35B3Q9H1N7 401 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 CEP295Q9C0D2 2601 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 TRAV24A0A0B4J272 114 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 C1orf196B1AJZ1 125 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 C15orf54Q8N8G6 183 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 LRTM2Q8N967 370 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 C12orf49Q9H741 205 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 BCO1Q9HAY6 547 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 POMT1Q9Y6A1 747 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 COL27A1Q8IZC6 1860 aaPredicted RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 TRDCB7Z8K6 153 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 TOX3O15405 576 aaPredicted RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 NAPSAO96009 420 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 IGKV1D-33P01593 117 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 IGKV1-33P01594 117 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 FUT3P21217 361 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 DTYMKP23919 212 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 MAGEA5P43359 124 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 GFRA1P56159 465 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 SPINK9Q5DT21 86 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 HEPN1Q6WQI6 88 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 WDR86Q86TI4 376 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 NEK7Q8TDX7 302 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 ZNF286AQ9HBT8 521 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 KCNJ16Q9NPI9 418 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 UBE2J1Q9Y385 318 aaPredicted RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 HCFC1P51610 2035 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 EIF1BO60739 113 aaKnown RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 APOC1P02654 83 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 MT-ND4LP03901 98 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 SOD3P08294 240 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 WNT5AP41221 380 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 MALLQ13021 153 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 EXT1Q16394 746 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 LGI3Q8N145 548 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 OR5P3Q8WZ94 311 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 RHOVQ96L33 236 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 Q9N2K0 584 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 LUZP4Q9P127 313 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 C19orf25Q9UFG5 118 aaPredicted RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 KPTNQ9Y664 436 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 S100A6P06703 90 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 SRP19P09132 144 aaKnown RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 METTL15P1P0C7V9 234 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 FOLR2P14207 255 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 DLK1P80370 383 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 LCN15Q6UWW0 184 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 PLEKHA2Q9HB19 425 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 PRSS50Q9UI38 385 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 ZFHX2Q9C0A1 2572 aaPredicted RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 OR2C1O95371 312 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 TRGC2P03986 189 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 CST2P09228 141 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 RAB5BP61020 215 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 HERV-K104P61576 105 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 ZFP36L1Q07352 338 aaKnown RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 ELOBQ15370 118 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 WDR25Q64LD2 544 aaPredicted RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 ZNF880Q6PDB4 577 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 LINC00696Q6ZRV3 163 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 NUFIP2Q7Z417 695 aaKnown RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 CXorf67Q86X51 503 aaPredicted RBP9.1□□□□□ -0.95
USP28-201ENST00000003302 ZNF100Q8IYN0 542 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 CPT1CQ8TCG5 803 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 RPRMQ9NS64 109 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 TINAGQ9UJW2 476 aa9.1□□□□□ -0.95
USP28-201ENST00000003302 RBFOX3A6NFN3 312 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 ZFP92A6NM28 416 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 CDS2O95674 445 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 SOHLH1Q5JUK2 328 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 UTF1Q5T230 341 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 PMS2CLQ68D20 193 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 THNSL2Q86YJ6 484 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 GPR61Q9BZJ8 451 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 ERRFI1Q9UJM3 462 aaPredicted RBP9.09□□□□□ -0.95
USP28-201ENST00000003302 TET2Q6N021 2002 aaPredicted RBP9.09□□□□□ -0.95
USP28-201ENST00000003302 CSMD2Q7Z408 3487 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 KLK3P07288 261 aaPredicted RBP9.09□□□□□ -0.95
USP28-201ENST00000003302 OR2T2Q6IF00 324 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 ZNF695Q8IW36 515 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 TPRX1Q8N7U7 411 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 GPR146Q96CH1 333 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 TUBA4BQ9H853 241 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 DOK5Q9P104 306 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 NEURL1O76050 574 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 ABLIM2Q6H8Q1 611 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 LHFPL2Q6ZUX7 228 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 ABHD5Q8WTS1 349 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 C5orf30Q96GV9 206 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 PPP1R3CQ9UQK1 317 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 WSB1Q9Y6I7 421 aa9.09□□□□□ -0.95
USP28-201ENST00000003302 ZNF816-ZNF321PA0A0X1KG74 233 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 RAMP3O60896 148 aa9.08□□□□□ -0.96
USP28-201ENST00000003302 PGLYRP1O75594 196 aaPredicted RBP9.08□□□□□ -0.96
USP28-201ENST00000003302 IGKV1-5P01602 117 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms