RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 ITGA3P26006 1051 aa17.27■□□□□ 0.35
SYNGAP1-227ENST00000638142 DYNLT3P51808 116 aa17.27■□□□□ 0.35
SYNGAP1-227ENST00000638142 KIAA0141Q14154 515 aaPredicted RBP17.27■□□□□ 0.35
SYNGAP1-227ENST00000638142 CDCP2Q5VXM1 449 aa17.27■□□□□ 0.35
SYNGAP1-227ENST00000638142 IL22RA1Q8N6P7 574 aa17.27■□□□□ 0.35
SYNGAP1-227ENST00000638142 IL22RA2Q969J5 263 aa17.27■□□□□ 0.35
SYNGAP1-227ENST00000638142 CPNE4Q96A23 557 aaPredicted RBP17.27■□□□□ 0.35
SYNGAP1-227ENST00000638142 HIPK2Q9H2X6 1198 aa17.27■□□□□ 0.35
SYNGAP1-227ENST00000638142 NOSIPQ9Y314 301 aaKnown RBP17.27■□□□□ 0.35
SYNGAP1-227ENST00000638142 SCTP09683 121 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 CEACAM1P13688 526 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 OR56B2PQ8NGI1 322 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 TMEM45BQ96B21 275 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 A0A087WWC5 75 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 H3BQ15 152 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 SRP19P09132 144 aaKnown RBP17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 CDX1P47902 265 aaPredicted RBP17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 MPV17LQ2QL34 196 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 WIPI1Q5MNZ9 446 aaPredicted RBP17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 ODF3L1Q8IXM7 274 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 REPIN1Q9BWE0 567 aaKnown RBP17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 PILRBQ9UKJ0 227 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 TCFL5Q9UL49 500 aa17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 MRPS18CQ9Y3D5 142 aaKnown RBP17.26■□□□□ 0.35
SYNGAP1-227ENST00000638142 IGKV1D-13A0A0B4J2D9 117 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 ZNF729A6NN14 1252 aaPredicted RBP17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 NTN3O00634 580 aaPredicted RBP17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 TRAPPC6AO75865 159 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 HSPB1P04792 205 aaKnown RBP17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 IGKV1-13P0DP09 117 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 RPS10P46783 165 aaKnown RBP17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 PRDX4Q13162 271 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 HERPUD1Q15011 391 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 OR8G1Q15617 311 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 DPPA3Q6W0C5 159 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 CMTM1Q8IZ96 169 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 OR5D13Q8NGL4 314 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 ABHD3Q8WU67 409 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 TRBV23-1A0A0A0MS06 115 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 H0Y980 276 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 CST7O76096 145 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 SLC34A2O95436 690 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 TMEM50AO95807 157 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 IGHEP01854 428 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 HAAOP46952 286 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 ZFP36L1Q07352 338 aaKnown RBP17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 AKR1C8PQ5T2L2 129 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 PLPPR1Q8TBJ4 325 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 RBMXL1Q96E39 390 aaKnown RBP17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 ATP23Q9Y6H3 246 aa17.25■□□□□ 0.35
SYNGAP1-227ENST00000638142 HSD17B6O14756 317 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 ZNF506Q5JVG8 444 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 RAB39BQ96DA2 213 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 LIPGQ9Y5X9 500 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 NCKAP5O14513 1909 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 SCAF4O95104 1147 aaKnown RBP17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 HBE1P02100 147 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 TLE4Q04727 773 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 IL24Q13007 206 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 HAGHQ16775 308 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 OR2B11Q5JQS5 317 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 PMS2CLQ68D20 193 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 ATP5SQ99766 215 aa17.24■□□□□ 0.35
SYNGAP1-227ENST00000638142 PIGBOS1A0A0B4J2F0 54 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 IFITM10A6NMD0 228 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 CHST1O43916 411 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 YIF1AO95070 293 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 ICAM4Q14773 271 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 CEACAM21Q3KPI0 293 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 ZDHHC23Q8IYP9 409 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 TMEM217Q8N7C4 229 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 FGF23Q9GZV9 251 aaPredicted RBP17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 CCL28Q9NRJ3 127 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 TREM2Q9NZC2 230 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 TNRC6BQ9UPQ9 1833 aaKnown RBP17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 EPHA1P21709 976 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 TAGLN2P37802 199 aaKnown RBP17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 GPM6AP51674 278 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 UBE2KP61086 200 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 C5orf24Q7Z6I8 188 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 ZNF845Q96IR2 970 aaPredicted RBP17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 RIMS4Q9H426 269 aaPredicted RBP17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 COLQQ9Y215 455 aaPredicted RBP17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 RNF115Q9Y4L5 304 aa17.23■□□□□ 0.35
SYNGAP1-227ENST00000638142 ZNF600Q6ZNG1 722 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 ZNF429Q86V71 674 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 MKXQ8IYA7 352 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 NEK7Q8TDX7 302 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 GTF3AQ92664 365 aaKnown RBP17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 GPHA2Q96T91 129 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 WSB1Q9Y6I7 421 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 IGKV1-6A0A0C4DH72 117 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 CXorf65A6NEN9 183 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 TRAPPC2LH3BP13 241 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 MRPL33O75394 65 aaKnown RBP17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 DFFBO76075 338 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 GDF1P27539 372 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 S100GP29377 79 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 GFRA1P56159 465 aa17.22■□□□□ 0.35
SYNGAP1-227ENST00000638142 TAS2R30P59541 319 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms