RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PPIAL4AQ9Y536 164 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 MAB21L2Q9Y586 359 aa15.39■□□□□ 0.05
CLN3-254ENST00000637050 UBR5O95071 2799 aaPredicted RBP15.39■□□□□ 0.05
CLN3-254ENST00000637050 CLEC18AA5D8T8 446 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 K7N7A8 449 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 FABP7O15540 132 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 HFEQ30201 348 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 ATPAF1Q5TC12 328 aaPredicted RBP15.38■□□□□ 0.05
CLN3-254ENST00000637050 ZNF660Q6AZW8 331 aaPredicted RBP15.38■□□□□ 0.05
CLN3-254ENST00000637050 CLEC18BQ6UXF7 455 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 ZNF788Q6ZQV5 615 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 CLEC18CQ8NCF0 446 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 MGAT4AQ9UM21 535 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 LAMP3Q9UQV4 416 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 ALG5Q9Y673 324 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 ABCA4P78363 2273 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 CEACAM18A8MTB9 384 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 GYPAP02724 150 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 SCTP09683 121 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 AESQ08117 197 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 DHRS11Q6UWP2 260 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 ZNRF1Q8ND25 227 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 CCDC107Q8WV48 283 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 NEU4Q8WWR8 484 aaPredicted RBP15.38■□□□□ 0.05
CLN3-254ENST00000637050 GAFA1Q96PS6 74 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 ZNF665Q9H7R5 613 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 TRAPPC2LQ9UL33 140 aa15.38■□□□□ 0.05
CLN3-254ENST00000637050 C7orf66A4D0T2 115 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 MGST3O14880 152 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 TK1P04183 234 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 COL8A2P25067 703 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 HLA-DRB3P79483 266 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 IGSF11Q5DX21 431 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 KRBOX4Q5JUW0 171 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 AADACL3Q5VUY0 350 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 ZDHHC22Q8N966 263 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 OR6F1Q8NGZ6 308 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 GIMAP1Q8WWP7 306 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 DNTTIP1Q9H147 329 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 KIF25Q9UIL4 384 aa15.37■□□□□ 0.05
CLN3-254ENST00000637050 HRNRQ86YZ3 2850 aaPredicted RBP15.36■□□□□ 0.05
CLN3-254ENST00000637050 TRAV39A0A0B4J263 110 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 TNFRSF13BO14836 293 aaPredicted RBP15.36■□□□□ 0.05
CLN3-254ENST00000637050 PRAF2O60831 178 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 GLIPR1P48060 266 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 MRPS11P82912 194 aaKnown RBP15.36■□□□□ 0.05
CLN3-254ENST00000637050 TLE4Q04727 773 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 HERPUD1Q15011 391 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 CARTPTQ16568 116 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 C5orf24Q7Z6I8 188 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 OR5D13Q8NGL4 314 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 OR4A4PQ8NGN8 299 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 CHAC2Q8WUX2 184 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 CCL13Q99616 98 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 FAM234AQ9H0X4 552 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 LIME1Q9H400 295 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 DLL4Q9NR61 685 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 VSIG4Q9Y279 399 aa15.36■□□□□ 0.05
CLN3-254ENST00000637050 USP9XQ93008 2570 aaPredicted RBP15.36■□□□□ 0.05
CLN3-254ENST00000637050 FLNCQ14315 2725 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 A0A0A6YYJ9 748 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 IGKV1-6A0A0C4DH72 117 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 SIGLEC5O15389 551 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 RP2O75695 350 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 FSTL3O95633 263 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 CLDN1O95832 211 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 RLN1P04808 185 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 CTXN2P0C2S0 81 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 ANXA7P20073 488 aaKnown RBP15.35■□□□□ 0.05
CLN3-254ENST00000637050 HMGN3Q15651 99 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 SLC36A1Q7Z2H8 476 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 ZNF2Q9BSG1 426 aaPredicted RBP15.35■□□□□ 0.05
CLN3-254ENST00000637050 ALX4Q9H161 411 aaPredicted RBP15.35■□□□□ 0.05
CLN3-254ENST00000637050 GHITMQ9H3K2 345 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 DSCAMO60469 2012 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 MEIKINA0A087WXM9 373 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 A0A1B0GW55 424 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 OR5H14A6NHG9 310 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 NKX6-3A6NJ46 265 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 LYNX1G3V0Z9 82 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 IL5P05113 134 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 DUX4L2P0CJ85 424 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 DUX4L3P0CJ86 424 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 DUX4L4P0CJ87 422 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 DUX4L5P0CJ88 424 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 DUX4L6P0CJ89 424 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 DUX4L7P0CJ90 424 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 LYNX1P0DP58 116 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 SELLP14151 372 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 GLP1RP43220 463 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 SEC61A1P61619 476 aaKnown RBP15.35■□□□□ 0.05
CLN3-254ENST00000637050 IL13RA1P78552 427 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 DUX4L9Q6RFH8 374 aaPredicted RBP15.35■□□□□ 0.05
CLN3-254ENST00000637050 PEG10Q86TG7 708 aaKnown RBP15.35■□□□□ 0.05
CLN3-254ENST00000637050 MARCH1Q8TCQ1 289 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 MED30Q96HR3 178 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 CABLES2Q9BTV7 478 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 BEX2Q9BXY8 128 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 NCOR1P1Q9H4R4 102 aa15.35■□□□□ 0.05
CLN3-254ENST00000637050 BEX1Q9HBH7 125 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms