RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TNFRSF11BO00300 401 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 ATP6V0E1O15342 81 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 CCNB2O95067 398 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 ZNF44P15621 663 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 HMGA2P52926 109 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 BCL2L15Q5TBC7 163 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 Q6ZSR3 168 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 ZNF679Q8IYX0 411 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 ELMOD2Q8IZ81 293 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 OR13A1Q8NGR1 328 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 BORCS8Q96FH0 119 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 IKZF2Q9UKS7 526 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 COPS3Q9UNS2 423 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 MRPS28Q9Y2Q9 187 aaKnown RBP11.09□□□□□ -0.63
CLN3-249ENST00000636685 TRAV41A0A0B4J266 112 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 MAGEB4O15481 346 aaPredicted RBP11.08□□□□□ -0.64
CLN3-249ENST00000636685 ZNF254O75437 659 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 CIB2O75838 187 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 KRT36O76013 467 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 IL1AP01583 271 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 CSN2P05814 226 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 MRPL3P09001 348 aaKnown RBP11.08□□□□□ -0.64
CLN3-249ENST00000636685 CD1BP29016 333 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 HTR1FP30939 366 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 RPS7P62081 194 aaKnown RBP11.08□□□□□ -0.64
CLN3-249ENST00000636685 ROM1Q03395 351 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 GALEQ14376 348 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 PLEKHG7Q6ZR37 379 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 GTSCR1Q86UQ5 136 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 OR8H1Q8NGG4 311 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 KRTAP4-5Q9BYR2 181 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 YIPF3Q9GZM5 350 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 PLEKHA3Q9HB20 300 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 PARP11Q9NR21 331 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 ABCD2Q9UBJ2 740 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 OR52A1Q9UKL2 312 aa11.08□□□□□ -0.64
CLN3-249ENST00000636685 NUPR2A6NF83 97 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 SLC33A1O00400 549 aaPredicted RBP11.07□□□□□ -0.64
CLN3-249ENST00000636685 PRODHO43272 600 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 GMNNO75496 209 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 CYB5AP00167 134 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 IGHV3-11P01762 117 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 HSPB1P04792 205 aaKnown RBP11.07□□□□□ -0.64
CLN3-249ENST00000636685 ODF4Q2M2E3 257 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 Q6P435 159 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 CPOQ8IVL8 374 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 TEX47Q8TBZ9 253 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 FLYWCH2Q96CP2 140 aaKnown RBP11.07□□□□□ -0.64
CLN3-249ENST00000636685 APOL4Q9BPW4 351 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 ZCCHC4Q9H5U6 513 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 GORASP2Q9H8Y8 452 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 PLEKHA1Q9HB21 404 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 KRT84Q9NSB2 600 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 KIF25Q9UIL4 384 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 R4GMQ9 66 aa11.07□□□□□ -0.64
CLN3-249ENST00000636685 MEIKINA0A087WXM9 373 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 NPIPB11E5RHQ5 1161 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 SOX15O60248 233 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 E2F6O75461 281 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 GATBO75879 557 aaKnown RBP11.06□□□□□ -0.64
CLN3-249ENST00000636685 RGS11O94810 467 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 COX4I1P13073 169 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 CCL1P22362 96 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 SLC2A5P22732 501 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 CEMP1Q6PRD7 247 aaPredicted RBP11.06□□□□□ -0.64
CLN3-249ENST00000636685 ZNF565Q8N9K5 539 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 MINDY2Q8NBR6 621 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 RTN4IP1Q8WWV3 396 aaPredicted RBP11.06□□□□□ -0.64
CLN3-249ENST00000636685 DGCR6LQ9BY27 220 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 CHST5Q9GZS9 411 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 COMMD4Q9H0A8 199 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 MOB1AQ9H8S9 216 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 LINC00574Q9H8X3 128 aa11.06□□□□□ -0.64
CLN3-249ENST00000636685 TRAV39A0A0B4J263 110 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 IGKV1-12A0A0C4DH73 117 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 SHISA3A0PJX4 238 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 H0Y980 276 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 HSPB6O14558 160 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 IGKV1D-12P01611 117 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 C21orf33P30042 268 aaPredicted RBP11.05□□□□□ -0.64
CLN3-249ENST00000636685 BLVRBP30043 206 aaPredicted RBP11.05□□□□□ -0.64
CLN3-249ENST00000636685 SSTR5P35346 364 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 RBP2P50120 134 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 ATP1B3P54709 279 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 PSME3P61289 254 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 SLC35D3Q5M8T2 416 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 SLC16A12Q6ZSM3 486 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 YIPF7Q8N8F6 280 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 MRGPRDQ8TDS7 321 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 MBOAT4Q96T53 435 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 NDE1Q9NXR1 346 aa11.05□□□□□ -0.64
CLN3-249ENST00000636685 IGHV7-81A0A0B4J1V7 117 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 A0A1W2PN81 502 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 IZUMO1RA6ND01 250 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 H3BN98 237 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 DEGS1O15121 323 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 MED14OSP0DP75 135 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 CHRNA7P36544 502 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 MTCP1P56278 107 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 EWSR1Q01844 656 aaKnown RBP eCLIP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms