RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 QRFPP83859 136 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 RSBN1Q5VWQ0 802 aaPredicted RBP14.81□□□□□ -0.04
CLN3-239ENST00000628023 SFXN4Q6P4A7 337 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 ZNF782Q6ZMW2 699 aaPredicted RBP14.81□□□□□ -0.04
CLN3-239ENST00000628023 USP43Q70EL4 1123 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 GPR141Q7Z602 305 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 NR2C2APQ86WQ0 139 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 NICN1Q9BSH3 213 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 TM2D1Q9BX74 207 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 ETAA1Q9NY74 926 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 DAPK2Q9UIK4 370 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 A0A0B4J203 849 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 A0A1W2PRD5 423 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 A0A1W2PRF3 423 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 A0A1W2PRM7 423 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 C17orf98A8MV24 154 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 CLPXO76031 633 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 RBP4P02753 201 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 CLEC2LP0C7M8 214 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 SLC2A2P11168 524 aaPredicted RBP14.8□□□□□ -0.04
CLN3-239ENST00000628023 COX7A1P24310 79 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 CFPP27918 469 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 DLX6P56179 175 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 BPIFB3P59826 476 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 SLC35E4Q6ICL7 350 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 RBMS3Q6XE24 437 aaKnown RBP14.8□□□□□ -0.04
CLN3-239ENST00000628023 ZNF565Q8N9K5 539 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 GCDHQ92947 438 aaPredicted RBP14.8□□□□□ -0.04
CLN3-239ENST00000628023 SUCNR1Q9BXA5 334 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 LPAR5Q9H1C0 372 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 HEXA-AS1Q9H8Q6 139 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 UNKLQ9H9P5 680 aaKnown RBP14.8□□□□□ -0.04
CLN3-239ENST00000628023 ANK2Q01484 3957 aa14.8□□□□□ -0.04
CLN3-239ENST00000628023 UBE2QL1A1L167 161 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 RNASEK-C17orf49H0YIS7 233 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 BLVRBP30043 206 aaPredicted RBP14.79□□□□□ -0.04
CLN3-239ENST00000628023 TGFBR1P36897 503 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 PAX5Q02548 391 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 SIGIRRQ6IA17 410 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 BCL6BQ8N143 479 aaPredicted RBP14.79□□□□□ -0.04
CLN3-239ENST00000628023 OR13D1Q8NGV5 346 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 DSCAML1Q8TD84 2053 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 MRGPRDQ8TDS7 321 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 CORO2AQ92828 525 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 PLEKHJ1Q9NW61 149 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 TAS2R3Q9NYW6 316 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 FBLN5Q9UBX5 448 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 RAB22AQ9UL26 194 aa14.79□□□□□ -0.04
CLN3-239ENST00000628023 A0A0A6YYD4 124 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 ZNF729A6NN14 1252 aaPredicted RBP14.78□□□□□ -0.04
CLN3-239ENST00000628023 GLAP06280 429 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 IGHV1-8P0DP01 117 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 CHATP28329 748 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 VEGFCP49767 419 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 HILS1P60008 231 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 FAM189A2Q15884 450 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 IDNKQ5T6J7 187 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 PRAMEF5Q5TYX0 476 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 OR13A1Q8NGR1 328 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 FAM216AQ8WUB2 273 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 CCDC107Q8WV48 283 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 DYRK2Q92630 601 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 TNFRSF14Q92956 283 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 NCOR1P1Q9H4R4 102 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 SESN1Q9Y6P5 492 aa14.78□□□□□ -0.04
CLN3-239ENST00000628023 KIAA2026Q5HYC2 2103 aa14.77□□□□□ -0.04
CLN3-239ENST00000628023 TRAV39A0A0B4J263 110 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 NPFFO15130 113 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 LDLRAD4O15165 306 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 CA11O75493 328 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 RAB6AP20340 208 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 CDK2P24941 298 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 ALDH3B2P48448 385 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 SERPINB10P48595 397 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 UBE2E1P51965 193 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 NCS1P62166 190 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 PLA2G7Q13093 441 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 GPR107Q5VW38 600 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 ZNF497Q6ZNH5 498 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 C9orf139Q6ZV77 190 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 C6orf201Q7Z4U5 140 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 PNKDQ8N490 385 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 C11orf42Q8N5U0 333 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 SIGLECL1Q8N7X8 197 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 C3orf56Q8N813 242 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 OR56B1Q8NGI3 324 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 ZDHHC16Q969W1 377 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 CALYQ9NYX4 217 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 SCOCQ9UIL1 159 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 TRAPPC2LQ9UL33 140 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 FAM96BQ9Y3D0 163 aa14.77□□□□□ -0.05
CLN3-239ENST00000628023 KBTBD11-OT1A0A1B0GTJ5 212 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 MEIOCA2RUB1 952 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 METTL21EPA6NDL7 271 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 SOCS1O15524 211 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 TFAP2AP05549 437 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 SNRPBP14678 240 aaKnown RBP14.76□□□□□ -0.05
CLN3-239ENST00000628023 OMGP23515 440 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 EFNB2P52799 333 aa14.76□□□□□ -0.05
CLN3-239ENST00000628023 VBP1P61758 197 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms