RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 MPDZO75970 2070 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 COL18A1P39060 1754 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 DENND4BO75064 1496 aaPredicted RBP0.37□□□□□ -2.35
SCN1A-208ENST00000625916 TRAV8-7A0A075B6U6 113 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 RNASEK-C17orf49H0YIS7 233 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 TCF21O43680 179 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 LIPCP11150 499 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 ANXA8P13928 327 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 NQO1P15559 274 aaKnown RBP0.37□□□□□ -2.35
SCN1A-208ENST00000625916 CD36P16671 472 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 ALOX5APP20292 161 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 ARR3P36575 388 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 ANXA8L1Q5VT79 327 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 LGALS9CQ6DKI2 356 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 SDIM1Q6ZPB5 146 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 SSX7Q7RTT5 188 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 COA5Q86WW8 74 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 GAPTQ8N292 157 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 ATPAF2Q8N5M1 289 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 OR4X2Q8NGF9 303 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 OR5T3Q8NGG3 340 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 ZNRF2Q8NHG8 242 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 CLHC1Q8NHS4 586 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 CD200R1Q8TD46 325 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 GTF2H4Q92759 462 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 MRPS24Q96EL2 167 aaKnown RBP0.37□□□□□ -2.35
SCN1A-208ENST00000625916 VAT1Q99536 393 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 APOL4Q9BPW4 351 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 Q9BRP9 147 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 TAPBPLQ9BX59 468 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 NXF2Q9GZY0 626 aaKnown RBP0.37□□□□□ -2.35
SCN1A-208ENST00000625916 CHRAC1Q9NRG0 131 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 TXNL4BQ9NX01 149 aaKnown RBP0.37□□□□□ -2.35
SCN1A-208ENST00000625916 NDUFB11Q9NX14 153 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 POMPQ9Y244 141 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 WASHC3Q9Y3C0 194 aa0.37□□□□□ -2.35
SCN1A-208ENST00000625916 IGHV3OR15-7A0A075B7D8 119 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 IGHV2-26A0A0B4J1V2 119 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 A0A1B0GXF2 115 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 J3QQQ9 107 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 CA2P00918 260 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 SLC2A1P11166 492 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 PRKACAP17612 351 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 GALP22466 123 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 PEBP1P30086 187 aaKnown RBP0.36□□□□□ -2.35
SCN1A-208ENST00000625916 CCT6AP40227 531 aaKnown RBP0.36□□□□□ -2.35
SCN1A-208ENST00000625916 LPAR6P43657 344 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 CBX5P45973 191 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 RPL26P61254 145 aaKnown RBP0.36□□□□□ -2.35
SCN1A-208ENST00000625916 DYNC1I2Q13409 638 aaKnown RBP0.36□□□□□ -2.35
SCN1A-208ENST00000625916 ZBTB6Q15916 424 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 TAL2Q16559 108 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 FAM229BQ4G0N7 80 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 CLEC2AQ6UVW9 174 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 ZFAND2AQ8N6M9 145 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 DRAXINQ8NBI3 349 aaPredicted RBP0.36□□□□□ -2.35
SCN1A-208ENST00000625916 BBOF1Q8ND07 529 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 NELFBQ8WX92 580 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 CLDN23Q96B33 292 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 MBOAT7Q96N66 472 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 BEX2Q9BXY8 128 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 CHRNA10Q9GZZ6 450 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 ALX4Q9H161 411 aaPredicted RBP0.36□□□□□ -2.35
SCN1A-208ENST00000625916 OR2AG1Q9H205 316 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 BABAM2Q9NXR7 383 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 IFNKQ9P0W0 207 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 PSMD13Q9UNM6 376 aa0.36□□□□□ -2.35
SCN1A-208ENST00000625916 RPL26L1Q9UNX3 145 aaKnown RBP0.36□□□□□ -2.35
SCN1A-208ENST00000625916 RRP15Q9Y3B9 282 aaKnown RBP0.36□□□□□ -2.35
SCN1A-208ENST00000625916 SOX21Q9Y651 276 aaPredicted RBP0.36□□□□□ -2.35
SCN1A-208ENST00000625916 NSD2O96028 1365 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 MALRD1Q5VYJ5 2156 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 MED13Q9UHV7 2174 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 NCF1BA6NI72 391 aaPredicted RBP0.35□□□□□ -2.35
SCN1A-208ENST00000625916 NCF1CA8MVU1 366 aaPredicted RBP0.35□□□□□ -2.35
SCN1A-208ENST00000625916 DENRO43583 198 aaKnown RBP0.35□□□□□ -2.35
SCN1A-208ENST00000625916 SOD1P00441 154 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 ZNF3P17036 446 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 GTF2H1P32780 548 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 GABRA3P34903 492 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 PLTPP55058 493 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 SKP2Q13309 424 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 UAP1Q16222 522 aaPredicted RBP0.35□□□□□ -2.35
SCN1A-208ENST00000625916 TPRXLQ17RH7 258 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 NDUFAF6Q330K2 333 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 TIMM23BQ5SRD1 257 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 FAM201AQ5SY85 155 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 FBXO36Q8NEA4 188 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 DOK4Q8TEW6 326 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 C16orf78Q8WTQ4 265 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 POTEKPQ9BYX7 375 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 VCX3AQ9NNX9 186 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 ACOT13Q9NPJ3 140 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 RHBDD3Q9Y3P4 386 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 PUS1Q9Y606 427 aaKnown RBP eCLIP0.35□□□□□ -2.35
SCN1A-208ENST00000625916 PTPRJQ12913 1337 aa0.35□□□□□ -2.35
SCN1A-208ENST00000625916 AQRO60306 1485 aaKnown RBP eCLIP0.35□□□□□ -2.35
SCN1A-208ENST00000625916 ARAP3Q8WWN8 1544 aa0.34□□□□□ -2.35
SCN1A-208ENST00000625916 ZNF469Q96JG9 3925 aaPredicted RBP0.34□□□□□ -2.35
SCN1A-208ENST00000625916 IGKV2-40A0A087WW87 121 aaPredicted RBP0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms