RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 NEK7Q8TDX7 302 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 DYRK2Q92630 601 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 ARHGAP5-AS1Q96IT6 56 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 PECRQ9BY49 303 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 SLIRPQ9GZT3 109 aaKnown RBP16.23■□□□□ 0.19
UPF3A-211ENST00000618700 GSX1Q9H4S2 264 aaPredicted RBP16.23■□□□□ 0.19
UPF3A-211ENST00000618700 ETAA1Q9NY74 926 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 COMMD3Q9UBI1 195 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 KIF25Q9UIL4 384 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 hADV38S2A0JD32 116 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 TMEM30CPA0ZSE6 113 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 UBE2QL1A1L167 161 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 A6NHS1 94 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 J3QLI3 93 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 MFNGO00587 321 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 HIST1H1DP16402 221 aaKnown RBP16.22■□□□□ 0.19
UPF3A-211ENST00000618700 Q6ZTK2 550 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 CMTM4Q8IZR5 234 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 CORO2AQ92828 525 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 RAB3CQ96E17 227 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 CMTM3Q96MX0 182 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 FAAP24Q9BTP7 215 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 PLEKHJ1Q9NW61 149 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 ING3Q9NXR8 418 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 KCNK7Q9Y2U2 307 aa16.22■□□□□ 0.19
UPF3A-211ENST00000618700 NSD1Q96L73 2696 aaPredicted RBP16.22■□□□□ 0.19
UPF3A-211ENST00000618700 A0A0A6YYH2 397 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 A6NJ64 397 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 MMP9P14780 707 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 DLX6P56179 175 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 MZT2AQ6P582 158 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 DCUN1D5Q9BTE7 237 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 SIRPDQ9H106 197 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 YAE1D1Q9NRH1 226 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 OPN4Q9UHM6 478 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 UBE2J1Q9Y385 318 aaPredicted RBP16.21■□□□□ 0.19
UPF3A-211ENST00000618700 KPTNQ9Y664 436 aa16.21■□□□□ 0.19
UPF3A-211ENST00000618700 MTORP42345 2549 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 MEIKINA0A087WXM9 373 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 A8MV72 311 aaPredicted RBP16.2■□□□□ 0.18
UPF3A-211ENST00000618700 M0R1W7 72 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 APOA1P02647 267 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 MT-ND4P03905 459 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 EIF4EP06730 217 aaKnown RBP16.2■□□□□ 0.18
UPF3A-211ENST00000618700 CCL3L1P16619 93 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 OLFML2AQ68BL7 652 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 FAHD2BQ6P2I3 314 aaPredicted RBP16.2■□□□□ 0.18
UPF3A-211ENST00000618700 OR13A1Q8NGR1 328 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 FAHD2AQ96GK7 314 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.2■□□□□ 0.18
UPF3A-211ENST00000618700 TMEM160Q9NX00 188 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 OR6C3Q9NZP0 311 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 ONECUT1Q9UBC0 465 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 AK3Q9UIJ7 227 aa16.2■□□□□ 0.18
UPF3A-211ENST00000618700 SONP18583 2426 aaKnown RBP16.2■□□□□ 0.18
UPF3A-211ENST00000618700 HIVEP2P31629 2446 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 SVEP1Q4LDE5 3571 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 A0A075B6Q4 140 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 TRGV10A0A0A0MS01 117 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 A0A1W2PPH5 198 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 MEX3AA1L020 520 aaKnown RBP16.19■□□□□ 0.18
UPF3A-211ENST00000618700 HPGDSO60760 199 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 NAPSAO96009 420 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 CGB3P0DN86 165 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 CGB7P0DN87 165 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 GNB3P16520 340 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 CDK2P24941 298 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 ARF6P62330 175 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 ARL6IP1Q15041 203 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 CR1LQ2VPA4 569 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 C1orf229Q6ZS94 237 aaPredicted RBP16.19■□□□□ 0.18
UPF3A-211ENST00000618700 C1orf122Q6ZSJ8 110 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 C11orf42Q8N5U0 333 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 Q8N7P7 452 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 MRPL30Q8TCC3 161 aaKnown RBP16.19■□□□□ 0.18
UPF3A-211ENST00000618700 ZNF714Q96N38 554 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 WDFY2Q96P53 400 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 NXF2Q9GZY0 626 aaKnown RBP16.19■□□□□ 0.18
UPF3A-211ENST00000618700 C7orf69Q9H7B7 122 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 UNKLQ9H9P5 680 aaKnown RBP16.19■□□□□ 0.18
UPF3A-211ENST00000618700 TAS2R3Q9NYW6 316 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 AUP1Q9Y679 476 aa16.19■□□□□ 0.18
UPF3A-211ENST00000618700 SERPINE3A8MV23 424 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 C17orf98A8MV24 154 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 RBP4P02753 201 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 ZNF728P0DKX0 622 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 GLP1RP43220 463 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 ZNF260Q3ZCT1 412 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 METTL11BQ5VVY1 283 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 Q6ZPA2 131 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 UPRTQ96BW1 309 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 TBX15Q96SF7 602 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 MIXL1Q9H2W2 232 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 ZMAT3Q9HA38 289 aaKnown RBP16.18■□□□□ 0.18
UPF3A-211ENST00000618700 C12orf4Q9NQ89 552 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 DIABLOQ9NR28 239 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 BATF3Q9NR55 127 aa16.18■□□□□ 0.18
UPF3A-211ENST00000618700 MBNL3Q9NUK0 354 aaKnown RBP16.18■□□□□ 0.18
UPF3A-211ENST00000618700 TRBV6-6A0A0A6YYG2 114 aa16.17■□□□□ 0.18
UPF3A-211ENST00000618700 XRCC3O43542 346 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms