RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 CCRL2O00421 344 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 PDCD5O14737 125 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 IGHV4-59P01825 116 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 MYL9P24844 172 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 PAX5Q02548 391 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 LRRC75BQ2VPJ9 315 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 MINOS1Q5TGZ0 78 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 ZNF626Q68DY1 528 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 TCF23Q7RTU1 214 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 LRRTM1Q86UE6 522 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 ABHD12Q8N2K0 398 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 DTX3Q8N9I9 347 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 OR6M1Q8NGM8 313 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 OR4F5Q8NH21 305 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 KCNG3Q8TAE7 436 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 NDNFQ8TB73 568 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 BANF2Q9H503 90 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 RAB18Q9NP72 206 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 KIF25Q9UIL4 384 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 VPREB3Q9UKI3 123 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 MINOS1-NBL1R4GNA1 71 aa15.76■□□□□ 0.11
UPF1-212ENST00000601689 IGHV2-26A0A0B4J1V2 119 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 KBTBD11-OT1A0A1B0GTJ5 212 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 A0A1W2PP11 408 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 BPNT1O95861 308 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 MPIG6BO95866 241 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 GLAP06280 429 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 PSMB9P28065 219 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 HTR1DP28221 377 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 SPARTQ8N0X7 666 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 PPIL3Q9H2H8 161 aaKnown RBP15.75■□□□□ 0.11
UPF1-212ENST00000601689 PEX16Q9Y5Y5 336 aa15.75■□□□□ 0.11
UPF1-212ENST00000601689 CA11O75493 328 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 FUT3P21217 361 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 GALP22466 123 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 NFYBP25208 207 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 CEACAM3P40198 252 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 FABP5Q01469 135 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 AWAT1Q58HT5 328 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 C1orf100Q5SVJ3 147 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 PRAMEF5Q5TYX0 476 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 UBE2UQ5VVX9 321 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 RSBN1Q5VWQ0 802 aaPredicted RBP15.74■□□□□ 0.11
UPF1-212ENST00000601689 DHRS7BQ6IAN0 325 aaPredicted RBP15.74■□□□□ 0.11
UPF1-212ENST00000601689 RAB12Q6IQ22 244 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 TMEM91Q6ZNR0 172 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 OR10A7Q8NGE5 316 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 FAM46BQ96A09 425 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 NEDD4LQ96PU5 975 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 URM1Q9BTM9 101 aaKnown RBP15.74■□□□□ 0.11
UPF1-212ENST00000601689 TMEM59Q9BXS4 323 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 BEX1Q9HBH7 125 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 NDUFB11Q9NX14 153 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 ETAA1Q9NY74 926 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 CALYQ9NYX4 217 aa15.74■□□□□ 0.11
UPF1-212ENST00000601689 POM121CA8CG34 1229 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 H3BUX3 64 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 AIPO00170 330 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 ARSBP15848 533 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 FAM189A2Q15884 450 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 ZNF773Q6PK81 442 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 LYPD6Q86Y78 171 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 MRGPRDQ8TDS7 321 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 VCX3AQ9NNX9 186 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 IDI2-AS1Q9NZ38 188 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 PITPNC1Q9UKF7 332 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 TRAPPC2LQ9UL33 140 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 AK6Q9Y3D8 172 aaKnown RBP15.73■□□□□ 0.11
UPF1-212ENST00000601689 AMMECR1Q9Y4X0 333 aaPredicted RBP15.73■□□□□ 0.11
UPF1-212ENST00000601689 V9GY05 133 aa15.73■□□□□ 0.11
UPF1-212ENST00000601689 TRDV1A0A1B0GX56 115 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 ODF3BA8MYP8 253 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 SLC22A1O15245 554 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 GPR137BO60478 399 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 IL1AP01583 271 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 OMGP23515 440 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 GP2P55259 537 aaKnown RBP15.72■□□□□ 0.11
UPF1-212ENST00000601689 RAB11BQ15907 218 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 SSX2Q16385 188 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 KCTD21Q4G0X4 260 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 C6orf183Q5T699 404 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 TRAT1Q6PIZ9 186 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 LIAT1Q6ZQX7 453 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 Q96M66 194 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 DPM3Q9P2X0 92 aa15.72■□□□□ 0.11
UPF1-212ENST00000601689 LEUTXA8MZ59 168 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 SLC17A2O00624 439 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 PDCD6O75340 191 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 RAG2P55895 527 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 SLC16A12Q6ZSM3 486 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 OR2W3Q7Z3T1 314 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 LHFPL4Q7Z7J7 247 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 TMEM104Q8NE00 496 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 OR13A1Q8NGR1 328 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 OR9G1Q8NH87 305 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 PLPPR1Q8TBJ4 325 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 KCNIP1Q9NZI2 227 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 RCC2Q9P258 522 aaKnown RBP15.71■□□□□ 0.11
UPF1-212ENST00000601689 SSR3Q9UNL2 185 aa15.71■□□□□ 0.11
UPF1-212ENST00000601689 TRAV1-2A0A0B4J238 106 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms