RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 RPL12P30050 165 aaKnown RBP9.13□□□□□ -0.95
LIG1-220ENST00000601091 MRPL23Q16540 153 aaKnown RBP9.13□□□□□ -0.95
LIG1-220ENST00000601091 C1orf100Q5SVJ3 147 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 SLC36A1Q7Z2H8 476 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 DNASE2BQ8WZ79 361 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 ADAT3Q96EY9 351 aaPredicted RBP9.13□□□□□ -0.95
LIG1-220ENST00000601091 FIGNL2A6NMB9 653 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 SLC33A1O00400 549 aaPredicted RBP9.13□□□□□ -0.95
LIG1-220ENST00000601091 SFT2D2O95562 160 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 ISG15P05161 165 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 DUSP1P28562 367 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 OPRM1P35372 400 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 OR3A4PP47883 348 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 PLP1P60201 277 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 PHLDA2Q53GA4 152 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 ZNF684Q5T5D7 378 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 PLXDC2Q6UX71 529 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 LGI3Q8N145 548 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 GFI1Q99684 422 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 CNTNAP3Q9BZ76 1288 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 KLK13Q9UKR3 277 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 TRDCB7Z8K6 153 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 PPIHO43447 177 aaKnown RBP9.13□□□□□ -0.95
LIG1-220ENST00000601091 ZNF354AO60765 605 aaPredicted RBP9.13□□□□□ -0.95
LIG1-220ENST00000601091 TTRP02766 147 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 TNFRSF1AP19438 455 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 GDF1P27539 372 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 FCGR2CP31995 323 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 ARR3P36575 388 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 Q7L0L9 218 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 MKXQ8IYA7 352 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 OR1S2Q8NGQ3 325 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 AKR1E2Q96JD6 320 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 STRADBQ9C0K7 418 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 VSIG4Q9Y279 399 aa9.13□□□□□ -0.95
LIG1-220ENST00000601091 C17orf51A8MQB3 221 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 RNF212BA8MTL3 300 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 SOCS1O15524 211 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 IGHV2-5P01817 119 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 GLI4P10075 376 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 SLC25A4P12235 298 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 ZNF345Q14585 488 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 HMGN3Q15651 99 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 OR2T2Q6IF00 324 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 OR8B12Q8NGG6 310 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 UBE2ZQ9H832 354 aaPredicted RBP9.12□□□□□ -0.95
LIG1-220ENST00000601091 FAM96BQ9Y3D0 163 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 SIT1Q9Y3P8 196 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 TSSC4Q9Y5U2 329 aaPredicted RBP9.12□□□□□ -0.95
LIG1-220ENST00000601091 ALPK3Q96L96 1907 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 LAMTOR5O43504 91 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 MRPL33O75394 65 aaKnown RBP9.12□□□□□ -0.95
LIG1-220ENST00000601091 BCKDHBP21953 392 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 GPR12P47775 334 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 UFC1Q9Y3C8 167 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 IGHV3-15A0A0B4J1V0 119 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 G3V3Q6 166 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 RAB27BO00194 218 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 PHF1O43189 567 aaPredicted RBP9.12□□□□□ -0.95
LIG1-220ENST00000601091 CEACAM6P40199 344 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 ATP5IP56385 69 aaPredicted RBP9.12□□□□□ -0.95
LIG1-220ENST00000601091 RPL23AP62750 156 aaKnown RBP9.12□□□□□ -0.95
LIG1-220ENST00000601091 ZNF260Q3ZCT1 412 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 NUFIP2Q7Z417 695 aaKnown RBP9.12□□□□□ -0.95
LIG1-220ENST00000601091 SLC25A31Q9H0C2 315 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 ANKRD10Q9NXR5 420 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 PRR13Q9NZ81 148 aa9.12□□□□□ -0.95
LIG1-220ENST00000601091 COL4A6Q14031 1691 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 TGIF2-C20orf24A0A0A6YYL0 155 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 TNFSF12O43508 249 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 BRI3O95415 125 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 SERPINE2P07093 398 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 OR5G3P0C626 314 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 CD79AP11912 226 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 AGAP20933 346 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 BRS3P32247 399 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 FBLN7Q53RD9 439 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 ABHD17BQ5VST6 288 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 OR1N2Q8NGR9 330 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 OR13C8Q8NGS7 320 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 PLEKHA2Q9HB19 425 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 CHD7Q9P2D1 2997 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 MS4A18H0YCH9 400 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 DHRS3O75911 302 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 F2RL1P55085 397 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 SRPXP78539 464 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 CCL7P80098 99 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 MS4A18Q3C1V0 323 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 PTCRAQ6ISU1 281 aaPredicted RBP9.11□□□□□ -0.95
LIG1-220ENST00000601091 PRSS54Q6PEW0 395 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 WDR5BQ86VZ2 330 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 FAM131CQ96AQ9 280 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 LPAR5Q9H1C0 372 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 FN3KRPQ9HA64 309 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 OR6C3Q9NZP0 311 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 FTCDNL1E5RQL4 147 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 ERVS71-1P61550 626 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 RAB32Q13637 225 aa9.11□□□□□ -0.95
LIG1-220ENST00000601091 ADAD2Q8NCV1 583 aaKnown RBP9.11□□□□□ -0.95
LIG1-220ENST00000601091 ADAMTS17Q8TE56 1095 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms