RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 UFSP2Q9NUQ7 469 aa12.24□□□□□ -0.45
VRK3-217ENST00000599538 KIR2DS1A0A191URI9 304 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 TUBAL3A6NHL2 446 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 I3L521 148 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 MPPED1O15442 326 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 CRYABP02511 175 aaKnown RBP12.23□□□□□ -0.45
VRK3-217ENST00000599538 KIR2DS4P43632 304 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 KIR2DS1Q14954 304 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 MEX3BQ6ZN04 569 aaKnown RBP12.23□□□□□ -0.45
VRK3-217ENST00000599538 GAPTQ8N292 157 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 KIRREL1Q96J84 757 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 C18orf12Q96KH6 178 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 ARPC5LQ9BPX5 153 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 CYTL1Q9NRR1 136 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 OR1A1Q9P1Q5 309 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 OR14J1Q9UGF5 321 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 SSUH2Q9Y2M2 353 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 PTPRQQ9UMZ3 2332 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 CACNA1DQ01668 2161 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 TRBV6-6A0A0A6YYG2 114 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 HSD17B6O14756 317 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 PSPNO60542 156 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 DIRAS3O95661 229 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 KITLGP21583 273 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 NAAAQ02083 359 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 ZNF146Q15072 292 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 SPIN3Q5JUX0 258 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 ZNF324BQ6AW86 544 aaPredicted RBP12.23□□□□□ -0.45
VRK3-217ENST00000599538 TBC1D26Q86UD7 250 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 PRR18Q8N4B5 295 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 Q8NA96 180 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 IL1F10Q8WWZ1 152 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 CNTNAP3BQ96NU0 1288 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 USB1Q9BQ65 265 aaKnown RBP12.23□□□□□ -0.45
VRK3-217ENST00000599538 SYT3Q9BQG1 590 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 SUCNR1Q9BXA5 334 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 CNTNAP3Q9BZ76 1288 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 TUBD1Q9UJT1 453 aa12.23□□□□□ -0.45
VRK3-217ENST00000599538 C3orf85A0A1B0GTC6 90 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 SCGB1D2O95969 90 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 IFNA21P01568 189 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 HLA-DRB3P79483 266 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 ZNF718Q3SXZ3 478 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 CISD2Q8N5K1 135 aaKnown RBP12.22□□□□□ -0.45
VRK3-217ENST00000599538 SLC35G3Q8N808 338 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 LRTM2Q8N967 370 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 OR52M1Q8NGK5 317 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 FAM57AQ8TBR7 257 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 BCL2L14Q9BZR8 327 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 SLC5A7Q9GZV3 580 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 RIMS4Q9H426 269 aaPredicted RBP12.22□□□□□ -0.45
VRK3-217ENST00000599538 LSM5Q9Y4Y9 91 aaKnown RBP12.22□□□□□ -0.45
VRK3-217ENST00000599538 SMG1Q96Q15 3661 aaKnown RBP12.22□□□□□ -0.45
VRK3-217ENST00000599538 hCG_1807616A0A1W2PRN6 198 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 A6NLC8 198 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 TMEM210A6NLX4 147 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 M0R1B8 84 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 TNFSF12O43508 249 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 TIMP3P35625 211 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 FAM27E3Q08E93 113 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 FAM180AQ6UWF9 173 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 ZNF497Q6ZNH5 498 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 Q8IYB0 196 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 HES4Q9HCC6 221 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 SDHAF2Q9NX18 166 aa12.22□□□□□ -0.45
VRK3-217ENST00000599538 PLCE1Q9P212 2302 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 ADGRG4Q8IZF6 3080 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 MBPP02686 304 aaPredicted RBP12.21□□□□□ -0.45
VRK3-217ENST00000599538 GLAP06280 429 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 BMP5P22003 454 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 GCH1P30793 250 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 CEACAM8P31997 349 aaPredicted RBP12.21□□□□□ -0.45
VRK3-217ENST00000599538 MBNL2Q5VZF2 373 aaKnown RBP12.21□□□□□ -0.45
VRK3-217ENST00000599538 TMEM268Q5VZI3 342 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 WDR82Q6UXN9 313 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 CCDC71LQ8N9Z2 235 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 GALNT11Q8NCW6 608 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 AQP10Q96PS8 301 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 PARP12Q9H0J9 701 aaKnown RBP12.21□□□□□ -0.45
VRK3-217ENST00000599538 CXXC4Q9H2H0 198 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 RHOFQ9HBH0 211 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 AMDHD2Q9Y303 409 aa12.21□□□□□ -0.45
VRK3-217ENST00000599538 MFSD2BA6NFX1 497 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 C1QTNF9BB2RNN3 333 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 H7C1Q1 480 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 DEDDO75618 318 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 HAND1O96004 215 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 HKR1P10072 659 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 TDGF1P3P51864 188 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 KRTCAP3Q53RY4 240 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 SPRNQ5BIV9 151 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 TIMM23BQ5SRD1 257 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 FAM53AQ6NSI3 398 aaPredicted RBP12.2□□□□□ -0.46
VRK3-217ENST00000599538 CLEC9AQ6UXN8 241 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 PDZD9Q8IXQ8 264 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 LGI3Q8N145 548 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 ZNF565Q8N9K5 539 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 OR4A4PQ8NGN8 299 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 RBPMSQ93062 196 aaKnown RBP12.2□□□□□ -0.46
VRK3-217ENST00000599538 DUSP13Q9UII6 198 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms