RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 FOXI3A8MTJ6 420 aaPredicted RBP13.19□□□□□ -0.3
UPF1-204ENST00000596842 ECI1P42126 302 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 GPM6AP51674 278 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 PSG4Q00888 419 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 SPSB1Q96BD6 273 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 MRPS17Q9Y2R5 130 aaKnown RBP13.19□□□□□ -0.3
UPF1-204ENST00000596842 IGLV3-12A0A075B6K2 115 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 IGSF23A1L1A6 192 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 FAM157AC9JC47 383 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 ZIC3O60481 467 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 DYNLT3P51808 116 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 SLC25A53Q5H9E4 307 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 CARFQ8N187 725 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 GAPTQ8N292 157 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 EXTL1Q92935 676 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 OR14J1Q9UGF5 321 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 HMGN3Q15651 99 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 Q5PR19 223 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 ZIC4Q8N9L1 334 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 ZNF488Q96MN9 340 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 GAB2Q9UQC2 676 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 C10orf142B7Z368 130 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 MPPED1O15442 326 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 TK1P04183 234 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 LIFP15018 202 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 ZNF239Q16600 458 aaKnown RBP13.18□□□□□ -0.3
UPF1-204ENST00000596842 MSI2Q96DH6 328 aaKnown RBP13.18□□□□□ -0.3
UPF1-204ENST00000596842 HS3ST6Q96QI5 342 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 FOXB1Q99853 325 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 GNG13Q9P2W3 67 aa13.18□□□□□ -0.3
UPF1-204ENST00000596842 A0A1W2PR80 420 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 PDCD6O75340 191 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 TRGC2P03986 189 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 TMEM267Q0VDI3 215 aaPredicted RBP13.17□□□□□ -0.3
UPF1-204ENST00000596842 KCNMB1Q16558 191 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 CST9LP1Q5W188 147 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 LCN15Q6UWW0 184 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 CYB561D1Q8N8Q1 229 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 CCL28Q9NRJ3 127 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 C9J4A7 227 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 RFPL3SP0C7P2 107 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 FGF8P55075 233 aaPredicted RBP13.17□□□□□ -0.3
UPF1-204ENST00000596842 SPNS3Q6ZMD2 512 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 ADPRHL1Q8NDY3 354 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 DMBX1Q8NFW5 382 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 ICE1Q9Y2F5 2266 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 RBFOX3A6NFN3 312 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 H3BQ15 152 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 DSCR4P56555 118 aaPredicted RBP13.17□□□□□ -0.3
UPF1-204ENST00000596842 RPL23AP62750 156 aaKnown RBP13.17□□□□□ -0.3
UPF1-204ENST00000596842 FAM27BQ5VT28 67 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 LHFPL2Q6ZUX7 228 aa13.17□□□□□ -0.3
UPF1-204ENST00000596842 VAMP5O95183 116 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 P04436 131 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 IAPPP10997 89 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 FUT3P21217 361 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 RPS23P62266 143 aaKnown RBP13.16□□□□□ -0.3
UPF1-204ENST00000596842 RAB11AP62491 216 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 PCOLCEQ15113 449 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 RAB35Q15286 201 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 OR56B2PQ8NGI1 322 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 TMEM171Q8WVE6 324 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 RAB39BQ96DA2 213 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 PHF7Q9BWX1 381 aaPredicted RBP13.16□□□□□ -0.3
UPF1-204ENST00000596842 OR5H1A6NKK0 313 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 CHST1O43916 411 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 BCL3P20749 454 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 RND3P61587 244 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 H3F3AP84243 136 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 GPR157Q5UAW9 335 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 FADS6Q8N9I5 356 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 SGCZQ96LD1 299 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 POMT1Q9Y6A1 747 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 COL4A2P08572 1712 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 HMGB3O15347 200 aaKnown RBP13.16□□□□□ -0.3
UPF1-204ENST00000596842 GDF1P27539 372 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 CXCL12P48061 93 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 RAB4BP61018 213 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 ZNF266Q14584 549 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 CMTM1Q8IZ96 169 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 BOD1Q96IK1 185 aa13.16□□□□□ -0.3
UPF1-204ENST00000596842 FGF7P21781 194 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 RELQ04864 619 aaPredicted RBP13.15□□□□□ -0.3
UPF1-204ENST00000596842 IL13RA2Q14627 380 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 LPAL2Q16609 132 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 C10orf128Q5T292 105 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 ZNF818PQ6ZRF7 136 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 TMEM54Q969K7 222 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 GINS3Q9BRX5 216 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 PRR14LQ5THK1 2151 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 C5orf49A4QMS7 147 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 M0R143 59 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 TMEM11P17152 192 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 RPS16P62249 146 aaKnown RBP13.15□□□□□ -0.3
UPF1-204ENST00000596842 MRPS34P82930 218 aaKnown RBP13.15□□□□□ -0.3
UPF1-204ENST00000596842 ZNF429Q86V71 674 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 TMEM252Q8N6L7 170 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 FRZBQ92765 325 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 CALHM2Q9HA72 323 aa13.15□□□□□ -0.3
UPF1-204ENST00000596842 IGKV1D-13A0A0B4J2D9 117 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms