RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 IGHV4-38-2P0DP08 117 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 BLVRBP30043 206 aaPredicted RBP8.65□□□□□ -1.02
LIG1-210ENST00000596332 EDDM3BP56851 147 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 SCAND1P57086 179 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 PAN3Q58A45 887 aaKnown RBP8.65□□□□□ -1.02
LIG1-210ENST00000596332 LDLRAD2Q5SZI1 272 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 ATAD3CQ5T2N8 411 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 FAM53AQ6NSI3 398 aaPredicted RBP8.65□□□□□ -1.02
LIG1-210ENST00000596332 ZNF880Q6PDB4 577 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 GDPD3Q7L5L3 318 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 OR4M2Q8NGB6 313 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 MRPL30Q8TCC3 161 aaKnown RBP8.65□□□□□ -1.02
LIG1-210ENST00000596332 RAB2BQ8WUD1 216 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 ARHGAP5-AS1Q96IT6 56 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 BCL7BQ9BQE9 202 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 HDHD3Q9BSH5 251 aaPredicted RBP8.65□□□□□ -1.02
LIG1-210ENST00000596332 GLS2Q9UI32 602 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 HSF4Q9ULV5 492 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 SPATA2Q9UM82 520 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 KPTNQ9Y664 436 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 AUP1Q9Y679 476 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 LINC00312Q9Y6C7 94 aa8.65□□□□□ -1.02
LIG1-210ENST00000596332 WNK2Q9Y3S1 2297 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 M0R1W7 72 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 MFNGO00587 321 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 TMEM127O75204 238 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 ZNF728P0DKX0 622 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 HOXB4P17483 251 aaPredicted RBP8.64□□□□□ -1.03
LIG1-210ENST00000596332 RCC1P18754 421 aaPredicted RBP8.64□□□□□ -1.03
LIG1-210ENST00000596332 PRTN3P24158 256 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 KCNJ3P48549 501 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 EDDM3AQ14507 147 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 KRBOX4Q5JUW0 171 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 USP43Q70EL4 1123 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 VMO1Q7Z5L0 202 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 CMTM4Q8IZR5 234 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 FAM185AQ8N0U4 392 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 OR10R2Q8NGX6 335 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 ABCG5Q9H222 651 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 MIXL1Q9H2W2 232 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 MBNL3Q9NUK0 354 aaKnown RBP8.64□□□□□ -1.03
LIG1-210ENST00000596332 ING3Q9NXR8 418 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 ABRACLQ9P1F3 81 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 AK3Q9UIJ7 227 aa8.64□□□□□ -1.03
LIG1-210ENST00000596332 TRBV6-6A0A0A6YYG2 114 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 MCRIP1C9JLW8 97 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 TOX4O94842 621 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 KLRD1Q13241 179 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 ZNF260Q3ZCT1 412 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 BTNL3Q6UXE8 466 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 Q6ZTK2 550 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 CROCCP3Q8IVE0 287 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 BCL6BQ8N143 479 aaPredicted RBP8.63□□□□□ -1.03
LIG1-210ENST00000596332 OR4K15Q8NH41 348 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 PPP1R35Q8TAP8 253 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 URM1Q9BTM9 101 aaKnown RBP8.63□□□□□ -1.03
LIG1-210ENST00000596332 SLIRPQ9GZT3 109 aaKnown RBP8.63□□□□□ -1.03
LIG1-210ENST00000596332 NXF2Q9GZY0 626 aaKnown RBP8.63□□□□□ -1.03
LIG1-210ENST00000596332 ZMAT3Q9HA38 289 aaKnown RBP8.63□□□□□ -1.03
LIG1-210ENST00000596332 SPACA1Q9HBV2 294 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.63□□□□□ -1.03
LIG1-210ENST00000596332 SIRT7Q9NRC8 400 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 RHBDL2Q9NX52 303 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 TAS2R3Q9NYW6 316 aa8.63□□□□□ -1.03
LIG1-210ENST00000596332 UBE2J1Q9Y385 318 aaPredicted RBP8.63□□□□□ -1.03
LIG1-210ENST00000596332 MEIKINA0A087WXM9 373 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 KBTBD11-OT1A0A1B0GTJ5 212 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 hADV38S2A0JD32 116 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 ZNF701M0R085 212 aaPredicted RBP8.62□□□□□ -1.03
LIG1-210ENST00000596332 CTDSP2O14595 271 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 SSX5O60225 188 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 HLA-DQB1P01920 261 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 RBP4P02753 201 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 EIF4EP06730 217 aaKnown RBP8.62□□□□□ -1.03
LIG1-210ENST00000596332 MELTFP08582 738 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 IGHV1-8P0DP01 117 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 HIST1H1DP16402 221 aaKnown RBP8.62□□□□□ -1.03
LIG1-210ENST00000596332 GNB3P16520 340 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 ZNF182P17025 639 aaPredicted RBP8.62□□□□□ -1.03
LIG1-210ENST00000596332 ELK1P19419 428 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 OMGP23515 440 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 SSTR5P35346 364 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 RORCP51449 518 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 LOXL3P58215 753 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 DYNC1I2Q13409 638 aaKnown RBP8.62□□□□□ -1.03
LIG1-210ENST00000596332 CDNFQ49AH0 187 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 NKAPLQ5M9Q1 402 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 HEPN1Q6WQI6 88 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 C9orf139Q6ZV77 190 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 PNKDQ8N490 385 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 OR56B1Q8NGI3 324 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 MRGPRDQ8TDS7 321 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 CCDC107Q8WV48 283 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 KCTD12Q96CX2 325 aaKnown RBP8.62□□□□□ -1.03
LIG1-210ENST00000596332 ZNF48Q96MX3 618 aaPredicted RBP8.62□□□□□ -1.03
LIG1-210ENST00000596332 ZNF714Q96N38 554 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 PCGF1Q9BSM1 259 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 ATG5Q9H1Y0 275 aa8.62□□□□□ -1.03
LIG1-210ENST00000596332 METTL8Q9H825 291 aaKnown RBP8.62□□□□□ -1.03
LIG1-210ENST00000596332 ETAA1Q9NY74 926 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms