RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 ING4Q9UNL4 249 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 TRAV24A0A0B4J272 114 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 A6NDX4 124 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 NPIPB11E5RHQ5 1161 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 F2RL2O00254 374 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 ORC5O43913 435 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 HTR3BO95264 441 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 CDK1P06493 297 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 CELP19835 753 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 GLIPR1P48060 266 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 EFNB2P52799 333 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 RPS11P62280 158 aaKnown RBP eCLIP8.47□□□□□ -1.05
LIG3-212ENST00000590181 EMX1Q04741 257 aaPredicted RBP8.47□□□□□ -1.05
LIG3-212ENST00000590181 FAM189A2Q15884 450 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 STEAP3Q658P3 488 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 TCF23Q7RTU1 214 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 BATF2Q8N1L9 274 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 BPIFB6Q8NFQ5 453 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 DPCDQ9BVM2 203 aaPredicted RBP8.47□□□□□ -1.05
LIG3-212ENST00000590181 FAM192AQ9GZU8 254 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 CST11Q9H112 138 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 IL36RNQ9UBH0 155 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 CLEC2DQ9UHP7 191 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 BLOC1S6Q9UL45 172 aa8.47□□□□□ -1.05
LIG3-212ENST00000590181 MEIKINA0A087WXM9 373 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 TMEM30CPA0ZSE6 113 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 MCRIP1C9JLW8 97 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 BUB1B-PAK6H3BSN5 160 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 CCRL2O00421 344 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 OR7C1O76099 320 aaPredicted RBP8.46□□□□□ -1.06
LIG3-212ENST00000590181 BPNT1O95861 308 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 IL1AP01583 271 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 LPLP06858 475 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 GNAO1P09471 354 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 FAM106CPP0CH98 169 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 RAB7AP51149 207 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 PSMD7P51665 324 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 KRTAP10-3P60369 221 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 SPHARQ15513 63 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 HLA-DRB5Q30154 266 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 RSBN1Q5VWQ0 802 aaPredicted RBP8.46□□□□□ -1.06
LIG3-212ENST00000590181 GLT8D1Q68CQ7 371 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 XAF1Q6GPH4 301 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 AHSA2Q719I0 299 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 OR8H3Q8N146 312 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 OR4P4Q8NGL7 312 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 CFHR4Q92496 578 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 COQ2Q96H96 371 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 DERL3Q96Q80 235 aa8.46□□□□□ -1.06
LIG3-212ENST00000590181 NR1H4Q96RI1 486 aaPredicted RBP8.46□□□□□ -1.06
LIG3-212ENST00000590181 MRPS28Q9Y2Q9 187 aaKnown RBP8.46□□□□□ -1.06
LIG3-212ENST00000590181 SIRT4Q9Y6E7 314 aaPredicted RBP8.46□□□□□ -1.06
LIG3-212ENST00000590181 PIN1P1O15428 100 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 XPNPEP2O43895 674 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 MRPS14O60783 128 aaKnown RBP8.45□□□□□ -1.06
LIG3-212ENST00000590181 PEX14O75381 377 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 CD37P11049 281 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 FUT3P21217 361 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 MYF6P23409 242 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 SNU13P55769 128 aaKnown RBP8.45□□□□□ -1.06
LIG3-212ENST00000590181 DLX1P56177 255 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 MADCAM1Q13477 382 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 FBLN7Q53RD9 439 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 C6orf183Q5T699 404 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 UNQ9370/PRO34162Q6UXP9 181 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 LHFPL4Q7Z7J7 247 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 JAGN1Q8N5M9 183 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 TPRX1Q8N7U7 411 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 SUMF2Q8NBJ7 301 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 FAM110DQ8TAY7 271 aaPredicted RBP8.45□□□□□ -1.06
LIG3-212ENST00000590181 C17orf50Q8WW18 174 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 ANKRD60Q9BZ19 345 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 MMP28Q9H239 520 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 DUSP21Q9H596 190 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 CALYQ9NYX4 217 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 IDI2-AS1Q9NZ38 188 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 KIF25Q9UIL4 384 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 HILPDAQ9Y5L2 63 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 COL7A1Q02388 2944 aa8.45□□□□□ -1.06
LIG3-212ENST00000590181 PTGES3LE9PB15 166 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 LY6LH3BQJ8 138 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 J3QR06 171 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 SPINT2O43291 252 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 TXNL1O43396 289 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 SC5DO75845 299 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 ARL6IP5O75915 188 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 OR2F2O95006 317 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 CDRT1O95170 752 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 LALBAP00709 142 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 SERPINA2P20848 420 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 GLP1RP43220 463 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 OR3A4PP47883 348 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 SLC35A2P78381 396 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 ATXN7L3Q14CW9 347 aaPredicted RBP8.44□□□□□ -1.06
LIG3-212ENST00000590181 LY6EQ16553 131 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 C17orf58Q2M2W7 97 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 SLC22A6Q4U2R8 563 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 ACSM3Q53FZ2 586 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 TPTE2P1Q5T6R2 138 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 AWAT2Q6E213 333 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms