RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	CEP19	Q96LK0	163 aa		10.81	□□□□□ -0.68
SS18-222	ENST00000582792	PNMA8C	A0A1B0GUJ8	204 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	FAM230A	A0A1W2PPH8	454 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	TMEM82	A0PJX8	343 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792		F8VVB4	439 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792		F8VWA3	439 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	CD24	P25063	80 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	BRS3	P32247	399 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	SOX2	P48431	317 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	ACSM3	Q53FZ2	586 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	KHDC1L	Q5JSQ8	128 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	SYT6	Q5T7P8	510 aa	Predicted RBP	10.8	□□□□□ -0.68
SS18-222	ENST00000582792	CDH26	Q8IXH8	852 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	TPRX1	Q8N7U7	411 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	TSPAN14	Q8NG11	270 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	OR13C9	Q8NGT0	318 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	RBM14	Q96PK6	669 aa	Known RBP	10.8	□□□□□ -0.68
SS18-222	ENST00000582792	DERL3	Q96Q80	235 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	SLC25A33	Q9BSK2	321 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	RHOF	Q9HBH0	211 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	MTCH1	Q9NZJ7	389 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	DPM3	Q9P2X0	92 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	CKLF	Q9UBR5	152 aa		10.8	□□□□□ -0.68
SS18-222	ENST00000582792	IGKV1-27	A0A075B6S5	117 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	CCRL2	O00421	344 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	MAGEB3	O15480	346 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	MMP23A	O75900	390 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	OR2F2	O95006	317 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	AMY1A	P04745	511 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	AMY2A	P04746	511 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	OCM	P0CE72	109 aa	Predicted RBP	10.79	□□□□□ -0.68
SS18-222	ENST00000582792	MTCP1	P56278	107 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	PPP3R1	P63098	170 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	DCTN2	Q13561	401 aa	Known RBP	10.79	□□□□□ -0.68
SS18-222	ENST00000582792	CD200R1L	Q6Q8B3	271 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	ETV3L	Q6ZN32	361 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	MRPL41	Q8IXM3	137 aa	Known RBP	10.79	□□□□□ -0.68
SS18-222	ENST00000582792		Q8IYB0	196 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	SAXO1	Q8IYX7	474 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	OR52N4	Q8NGI2	321 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	OR13C5	Q8NGS8	318 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	TRMT10A	Q8TBZ6	339 aa	Known RBP	10.79	□□□□□ -0.68
SS18-222	ENST00000582792	SLAMF9	Q96A28	289 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	OR14A2	Q96R54	314 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	TMED9	Q9BVK6	235 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	SEBOX	Q9HB31	216 aa	Predicted RBP	10.79	□□□□□ -0.68
SS18-222	ENST00000582792	VCX3A	Q9NNX9	186 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	TMEM138	Q9NPI0	162 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	NDUFB11	Q9NX14	153 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	TAS2R4	Q9NYW5	299 aa		10.79	□□□□□ -0.68
SS18-222	ENST00000582792	HAND1	O96004	215 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	UCHL1	P09936	223 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	GABRR1	P24046	479 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	PSMB9	P28065	219 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	BDKRB2	P30411	391 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	ARHGDIB	P52566	201 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	GRK1	Q15835	563 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	SSX1	Q16384	188 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	ABHD12	Q8N2K0	398 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	OSR2	Q8N2R0	312 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	OR51D1	Q8NGF3	324 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	ZNF596	Q8TC21	504 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	MUL1	Q969V5	352 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	MCRIP2	Q9BUT9	160 aa	Known RBP	10.78	□□□□□ -0.68
SS18-222	ENST00000582792	CHST6	Q9GZX3	395 aa		10.78	□□□□□ -0.68
SS18-222	ENST00000582792	UBE2J1	Q9Y385	318 aa	Predicted RBP	10.78	□□□□□ -0.68
SS18-222	ENST00000582792	STAB2	Q8WWQ8	2551 aa		10.77	□□□□□ -0.68
SS18-222	ENST00000582792	SH2D7	A6NKC9	451 aa	Predicted RBP	10.77	□□□□□ -0.69
SS18-222	ENST00000582792	MGST3	O14880	152 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	PSPN	O60542	156 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	ARL6IP5	O75915	188 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	INMT	O95050	263 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	CYB5A	P00167	134 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	IGLV1-47	P01700	117 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	HCK	P08631	526 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	ERP29	P30040	261 aa	Known RBP	10.77	□□□□□ -0.69
SS18-222	ENST00000582792	THBS3	P49746	956 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	ZP1	P60852	638 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	RPS25	P62851	125 aa	Known RBP	10.77	□□□□□ -0.69
SS18-222	ENST00000582792	PDZK1IP1	Q13113	114 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	KISS1	Q15726	138 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	OR52W1	Q6IF63	320 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	BAIAP2L2	Q6UXY1	529 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	TMEM91	Q6ZNR0	172 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	SLC25A26	Q70HW3	274 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	CEACAM19	Q7Z692	300 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	TRAPPC6B	Q86SZ2	158 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	RTN4RL2	Q86UN3	420 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	PXT1	Q8NFP0	134 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	EMG1	Q92979	244 aa	Known RBP	10.77	□□□□□ -0.69
SS18-222	ENST00000582792	IL36RN	Q9UBH0	155 aa		10.77	□□□□□ -0.69
SS18-222	ENST00000582792	TRDV1	A0A1B0GX56	115 aa		10.76	□□□□□ -0.69
SS18-222	ENST00000582792	LEUTX	A8MZ59	168 aa		10.76	□□□□□ -0.69
SS18-222	ENST00000582792		M0QZK8	103 aa		10.76	□□□□□ -0.69
SS18-222	ENST00000582792	NHLRC4	P0CG21	123 aa	Predicted RBP	10.76	□□□□□ -0.69
SS18-222	ENST00000582792	CD37	P11049	281 aa		10.76	□□□□□ -0.69
SS18-222	ENST00000582792	RANBP1	P43487	201 aa		10.76	□□□□□ -0.69
SS18-222	ENST00000582792	P2RX3	P56373	397 aa		10.76	□□□□□ -0.69
SS18-222	ENST00000582792	HSD17B12	Q53GQ0	312 aa		10.76	□□□□□ -0.69
SS18-222	ENST00000582792	PRAMEF5	Q5TYX0	476 aa		10.76	□□□□□ -0.69

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