RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 KLF14Q8TD94 323 aaPredicted RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 MITD1Q8WV92 249 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 RNF141Q8WVD5 230 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 ITLN2Q8WWU7 325 aaPredicted RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 TMEM186Q96B77 213 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 ISOC1Q96CN7 298 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 TSPAN32Q96QS1 320 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 UQCC2Q9BRT2 126 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 GABARAPL1Q9H0R8 117 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 CRIM1Q9NZV1 1036 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 THADAQ6YHU6 1953 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 IGHV3-72A0A0B4J1Y9 119 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 TRDV1A0A1B0GX56 115 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 A0A1W2PPV9 198 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 TMEM235A6NFC5 223 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 TMEM200CA6NKL6 621 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 C17orf100A8MU93 164 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 ARPC5O15511 151 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 TSPAN2O60636 221 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 S1PR2O95136 353 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 DUS4LO95620 317 aaKnown RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 EFEMP2O95967 443 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 SLC25A5P05141 298 aaKnown RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 CPN1P15169 458 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 ELK1P19419 428 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 PSMB1P20618 241 aaKnown RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 ZP3P21754 424 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 GATA3P23771 443 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 GDNFP39905 211 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 MFAP4P55083 255 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 BTG1P62324 171 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 PAX5Q02548 391 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 MEF2CQ06413 473 aaPredicted RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 CDK5R1Q15078 307 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 ZNF181Q2M3W8 571 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 SLC25A53Q5H9E4 307 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 SAMD13Q5VXD3 122 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 MRPL14Q6P1L8 145 aaKnown RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 RTN4RL2Q86UN3 420 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 ZBTB34Q8NCN2 500 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 OR51S1Q8NGJ8 323 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 FAM213BQ8TBF2 198 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 VWCEQ96DN2 955 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 GNPNAT1Q96EK6 184 aaPredicted RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 SCARF2Q96GP6 870 aaPredicted RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 MS4A3Q96HJ5 214 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 SAMD10Q9BYL1 202 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 MMP26Q9NRE1 261 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 MED9Q9NWA0 146 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 SIGLEC7Q9Y286 467 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 ARID1AO14497 2285 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 PKDREJQ9NTG1 2253 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 PTPN13Q12923 2485 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 DDX60LQ5H9U9 1706 aaKnown RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 PLXNA3P51805 1871 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 TRAV30A0A087WSZ9 112 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 A0A1B0GTL3 188 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 TMEM129A0AVI4 362 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 ZNF729A6NN14 1252 aaPredicted RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 NPIPB6E9PJ23 425 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 HRKO00198 91 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 FFAR1O14842 300 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 HPXP02790 462 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 PMELP40967 661 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 LIMS1P48059 325 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 DAPP51397 102 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 WNT3P56703 355 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 PIGPP57054 158 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 PSG4Q00888 419 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 AESQ08117 197 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 TUSC1Q2TAM9 212 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 C2orf76Q3KRA6 126 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 C20orf196Q8IYI0 205 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 C9orf106Q8NAJ2 232 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 SYT8Q8NBV8 401 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 OR1B1Q8NGR6 318 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 SMIM19Q96E16 107 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 ABHD14AQ9BUJ0 271 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 FUNDC2Q9BWH2 189 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 BEX4Q9NWD9 120 aaPredicted RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 NDUFB11Q9NX14 153 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 IDI2-AS1Q9NZ38 188 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 SLC45A2Q9UMX9 530 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 LSM2Q9Y333 95 aaKnown RBP2.54□□□□□ -2
SMCHD1-203ENST00000577880 TMEM56-RWDD3S4R434 201 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 TCHHQ07283 1943 aa2.54□□□□□ -2
SMCHD1-203ENST00000577880 USF3Q68DE3 2245 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 TRAV40A0A0B4J280 105 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 ZC3H12DA2A288 527 aaKnown RBP2.53□□□□□ -2
SMCHD1-203ENST00000577880 SNURFLB1AK76 121 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 AGPAT2O15120 278 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 TMEM127O75204 238 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 SAP30O75446 220 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 RHBDL1O75783 438 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 C1QL1O75973 258 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 ISG15P05161 165 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 TRAPPC2P0DI81 140 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 TRAPPC2BP0DI82 140 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 AREGP15514 252 aa2.53□□□□□ -2
SMCHD1-203ENST00000577880 RAB6AP20340 208 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms