RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 BAALCQ8WXS3 180 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 RORBQ92753 470 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 POP5Q969H6 163 aaKnown RBP5.01□□□□□ -1.61
VPS53-212ENST00000572259 S100PBPQ96BU1 408 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 NSL1Q96IY1 281 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 LINC00470Q9BZP3 86 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 SHARPINQ9H0F6 387 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 OR51B6Q9H340 312 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 SP140LQ9H930 580 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 FKRPQ9H9S5 495 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 CMTM6Q9NX76 183 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 RIMS3Q9UJD0 308 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 SAMD4AQ9UPU9 718 aaKnown RBP5.01□□□□□ -1.61
VPS53-212ENST00000572259 MED31Q9Y3C7 131 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 OR2W1Q9Y3N9 320 aa5.01□□□□□ -1.61
VPS53-212ENST00000572259 F8P00451 2351 aa5□□□□□ -1.61
VPS53-212ENST00000572259 IGHV2-70DA0A0C4DH43 119 aa5□□□□□ -1.61
VPS53-212ENST00000572259 LOC105371267A0A1B0GV96 52 aa5□□□□□ -1.61
VPS53-212ENST00000572259 OR5H1A6NKK0 313 aa5□□□□□ -1.61
VPS53-212ENST00000572259 FTCDNL1E5RQL4 147 aa5□□□□□ -1.61
VPS53-212ENST00000572259 NME4O00746 187 aa5□□□□□ -1.61
VPS53-212ENST00000572259 SGCEO43556 437 aa5□□□□□ -1.61
VPS53-212ENST00000572259 SOX15O60248 233 aa5□□□□□ -1.61
VPS53-212ENST00000572259 OR7A10O76100 309 aa5□□□□□ -1.61
VPS53-212ENST00000572259 SERPINA1P01009 418 aa5□□□□□ -1.61
VPS53-212ENST00000572259 IGF2P01344 180 aa5□□□□□ -1.61
VPS53-212ENST00000572259 IGHV3-9P01782 118 aa5□□□□□ -1.61
VPS53-212ENST00000572259 IGHV4-30-4P0DP06 118 aa5□□□□□ -1.61
VPS53-212ENST00000572259 HSD17B1P14061 328 aa5□□□□□ -1.61
VPS53-212ENST00000572259 MGMTP16455 207 aa5□□□□□ -1.61
VPS53-212ENST00000572259 HLA-GP17693 338 aa5□□□□□ -1.61
VPS53-212ENST00000572259 COX5AP20674 150 aa5□□□□□ -1.61
VPS53-212ENST00000572259 IGHV1-2P23083 117 aa5□□□□□ -1.61
VPS53-212ENST00000572259 OR1E2P47887 323 aa5□□□□□ -1.61
VPS53-212ENST00000572259 GSK3BP49841 420 aa5□□□□□ -1.61
VPS53-212ENST00000572259 SMIM11AP58511 58 aa5□□□□□ -1.61
VPS53-212ENST00000572259 KRTAP10-9P60411 292 aa5□□□□□ -1.61
VPS53-212ENST00000572259 UBE2NP61088 152 aaKnown RBP5□□□□□ -1.61
VPS53-212ENST00000572259 PSG5Q15238 335 aa5□□□□□ -1.61
VPS53-212ENST00000572259 TAB1Q15750 504 aa5□□□□□ -1.61
VPS53-212ENST00000572259 ATP6V1FQ16864 119 aa5□□□□□ -1.61
VPS53-212ENST00000572259 RBM48Q5RL73 367 aaKnown RBP5□□□□□ -1.61
VPS53-212ENST00000572259 IDNKQ5T6J7 187 aa5□□□□□ -1.61
VPS53-212ENST00000572259 CENPNQ96H22 339 aaPredicted RBP5□□□□□ -1.61
VPS53-212ENST00000572259 RNF2Q99496 336 aa5□□□□□ -1.61
VPS53-212ENST00000572259 MICU1Q9BPX6 476 aa5□□□□□ -1.61
VPS53-212ENST00000572259 MMP28Q9H239 520 aa5□□□□□ -1.61
VPS53-212ENST00000572259 FGF20Q9NP95 211 aaPredicted RBP5□□□□□ -1.61
VPS53-212ENST00000572259 FAIMQ9NVQ4 179 aa5□□□□□ -1.61
VPS53-212ENST00000572259 PLEKHJ1Q9NW61 149 aa5□□□□□ -1.61
VPS53-212ENST00000572259 SLC22A13Q9Y226 551 aa5□□□□□ -1.61
VPS53-212ENST00000572259 V9GYQ6 96 aa5□□□□□ -1.61
VPS53-212ENST00000572259 ITPR3Q14573 2671 aa5□□□□□ -1.61
VPS53-212ENST00000572259 IGKV1D-42A0A075B6H8 117 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 TRBV4-1A0A0J9YWV2 114 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 A0A1W2PRG6 482 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 DEFB108AA8MXU0 73 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 C11orf98E9PRG8 122 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 RPL36A-HNRNPH2H7BZ11 118 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 PLPP3O14495 311 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 MGRN1O60291 552 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 RAMP1O60894 148 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 CDK2AP2O75956 126 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 TNFAIP8O95379 198 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 TOMM40O96008 361 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 BGLAPP02818 100 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 OR4E1P0C645 316 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 KLK2P20151 261 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 CFL1P23528 166 aaKnown RBP4.99□□□□□ -1.61
VPS53-212ENST00000572259 C21orf33P30042 268 aaPredicted RBP4.99□□□□□ -1.61
VPS53-212ENST00000572259 CCKARP32238 428 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 GUCA1AP43080 201 aaPredicted RBP4.99□□□□□ -1.61
VPS53-212ENST00000572259 RANBP1P43487 201 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 AMTP48728 403 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 GNG10P50151 68 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 P2RY4P51582 365 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 CDH11P55287 796 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 CXCR4P61073 352 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 HERV-K104P61576 105 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 S100A12P80511 92 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 LAGE3Q14657 143 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 RAB35Q15286 201 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 FAM106AQ4KMX7 169 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 NCMAPQ5T1S8 102 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 TSPO2Q5TGU0 170 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 OR2G6Q5TZ20 316 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 C8orf82Q6P1X6 216 aaPredicted RBP4.99□□□□□ -1.61
VPS53-212ENST00000572259 PAMR1Q6UXH9 720 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 C16orf82Q7Z2V1 217 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 CMTM1Q8IZ96 169 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 DEFB107AQ8IZN7 70 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 ZIC4Q8N9L1 334 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 OR4D11Q8NGI4 311 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 OR52H1Q8NGJ2 320 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 OR6N1Q8NGY5 312 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 FNDC8Q8TC99 324 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 SGTBQ96EQ0 304 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 ZNF75AQ96N20 296 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 ZNF385AQ96PM9 386 aaKnown RBP4.99□□□□□ -1.61
VPS53-212ENST00000572259 CCL19Q99731 98 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms