RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NEUROG3Q9Y4Z2 214 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 RAI2Q9Y5P3 530 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 INSL5Q9Y5Q6 135 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 LIPGQ9Y5X9 500 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ETV7Q9Y603 341 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 GLI3P10071 1580 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 COL5A3P25940 1745 aaPredicted RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 MYO10Q9HD67 2058 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 NHSQ6T4R5 1651 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 CHD3Q12873 2000 aaKnown RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 LOC100509620A0A075B734 347 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 A0A087WUU8 490 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 A0A096LPK6 155 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 TRBV6-7A0A0A0MS04 114 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 CENPVL3A0A0U1RRI6 287 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 TMEM129A0AVI4 362 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ODAMA1E959 279 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 LRP5LA4QPB2 252 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 TLCD2A6NGC4 264 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 MBD3L5A6NJ08 208 aaPredicted RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 FAM90A8PA6NJQ4 464 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 H3BQ15 152 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 J3QR89 54 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 PIRO00625 290 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 TRAF3IP2O43734 574 aaPredicted RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 ALOX12BO75342 701 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 HYPMO75409 117 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 FOXH1O75593 365 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 NEURL1O76050 574 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 DUS4LO95620 317 aaKnown RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 TBX6O95947 436 aaPredicted RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 CGAP01215 116 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ICAM1P05362 532 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 FAM90A13PP0C7W8 464 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 FAM90A24PP0C7X0 464 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 IGLC2P0DOY2 106 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 IGLC3P0DOY3 106 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ERGP11308 486 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 CD99P14209 185 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 MMP9P14780 707 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 NMBRP28336 390 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 TSPOP30536 169 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ZFP36L2P47974 494 aaKnown RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 SLC6A12P48065 614 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 NPBWR2P48146 333 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 FOXA1P55317 472 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 CLDN15P56746 228 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 SEC61GP60059 68 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 RPL8P62917 257 aaKnown RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 LCN2P80188 198 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 MEF2BQ02080 365 aaPredicted RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 OR8B8Q15620 311 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ZIC1Q15915 447 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ACKR1Q16570 336 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 HIST3H3Q16695 136 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 LY6G6FQ5SQ64 297 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 TIMM23BQ5SRD1 257 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 UTF1Q5T230 341 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 TMEM78Q5T7P6 136 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 RUSC1-AS1Q66K80 236 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ZNF343Q6P1L6 599 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 NIPAL3Q6P499 406 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 RNASEKQ6P5S7 137 aaKnown RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 ENPP7Q6UWV6 458 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 C17orf99Q6UX52 265 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 C9orf47Q6ZRZ4 202 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ZNF534Q76KX8 674 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ERASQ7Z444 233 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 CMC1Q7Z7K0 106 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 C17orf64Q86WR6 236 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 BLIDQ8IZY5 108 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 SLC39A11Q8N1S5 342 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 SYS1Q8N2H4 156 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 MUC15Q8N387 334 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 RNF175Q8N4F7 328 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 DEFB125Q8N687 156 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 KLHDC1Q8N7A1 406 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 LRRC75AQ8NAA5 344 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 POC1AQ8NBT0 407 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 GPR32P1Q8NGA4 272 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 OR5AU1Q8NGC0 362 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 OR5A1Q8NGJ0 315 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 OR5D13Q8NGL4 314 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 OR4F5Q8NH21 305 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 OR4X1Q8NH49 305 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 OR2AE1Q8NHA4 323 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 TMED6Q8WW62 240 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 DCUN1D4Q92564 292 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 EMG1Q92979 244 aaKnown RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 GLYATL1Q969I3 302 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 RNF183Q96D59 192 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 SLAMF6Q96DU3 332 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 BTF3L4Q96K17 158 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 DNAJC30Q96LL9 226 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 ZNF681Q96N22 645 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 GABRG3Q99928 467 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 NDFIP1Q9BT67 221 aa2.77□□□□□ -1.97
VPS35-208ENST00000568612 MCRIP2Q9BUT9 160 aaKnown RBP2.77□□□□□ -1.97
VPS35-208ENST00000568612 SCRT1Q9BWW7 348 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms